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Full Discussion: Join not working properly
Top Forums Shell Programming and Scripting Join not working properly Post 302879878 by ritakadm on Monday 16th of December 2013 09:51:27 AM
Old 12-16-2013
Ok, I used the code removing a $n from line 4,
Code:
awk     'NR==FNR        {T[$1]=($1="")$0; next}                         
                                        {C=split ($3,I,",")                         
 n=NF+1                          for (i=1; i<=C; i++) $n=($n?",":"")T[I[i]]}       
   1        
 ' /tmp/mt4.genenames.txt file1

The output doesnt pick up anything from genenames, it is the same as the input.

Code:
#   awk     'NR==FNR        {T[$1]=($1="")$0; next}
>                           {
>                           C=split ($3,I,",")
>                        n = NF+1
>                            for (i=1; i<=C; i++) $n=($n?",":"")T[I[i]]}
>            1
>         ' mt4.genenames.sorted.txt file1 | head
XLOC_048267 XLOC_048267 Medtr0001s0120 scaffold0001:49523-50287 q1 q2 OK 1.84679 0 -inf nan 5e-05 0.000126299 yes up
XLOC_048258 XLOC_048258 Medtr0001s0190 scaffold0001:64218-69070 q1 q2 OK 3.61301 0 -inf nan 5e-05 0.000126299 yes up
XLOC_048271 XLOC_048271 Medtr0001s0430 scaffold0001:188781-195705 q1 q2 OK 9.48928 3.76233 -1.33467 -4.06109 5e-05 0.000126299 yes up
XLOC_048260 XLOC_048260 Medtr0001s0490 scaffold0001:397820-401891 q1 q2 OK 10.303 4.14216 -1.31462 -3.77643 5e-05 0.000126299 yes up
XLOC_048263 XLOC_048263 Medtr0001s0570 scaffold0001:430832-437206 q1 q2 OK 7.21593 4.49932 -0.681479 -2.09584 0.00025 0.00057981 yes up
XLOC_048274 XLOC_048274 Medtr0001s0660 scaffold0001:502646-507542 q1 q2 OK 17.1506 2.11969 -3.01634 -7.77595 5e-05 0.000126299 yes up
XLOC_048321 XLOC_048321 Medtr0002s0270 scaffold0002:187389-188523 q1 q2 OK 0.232771 4.20249 4.17426 5.6741 0.0001 0.000244358 yes down
XLOC_048337 XLOC_048337 Medtr0002s0900 scaffold0002:341925-343403 q1 q2 OK 69.3725 28.7422 -1.27119 -4.90762 5e-05 0.000126299 yes up
XLOC_048340 XLOC_048340 Medtr0002s1060 scaffold0002:400363-401875 q1 q2 OK 1.527 160.669 6.71725 14.7088 5e-05 0.000126299 yes down
XLOC_048308 XLOC_048308 Medtr0002s1200 scaffold0002:454553-457418 q1 q2 OK 11.0499 0.148847 -6.21406 -6.09651 0.00165 0.00334041 yes up

Something is missing in the code in this line, after the second $n
Code:
for (i=1; i<=C; i++) $n=$n($n?",":"")T[I[i]]}

Last edited by ritakadm; 12-16-2013 at 12:14 PM..
 

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LEARN ABOUT OSX

cacoshf

CACOSH(3)						   BSD Library Functions Manual 						 CACOSH(3)

NAME

     cacosh -- complex inverse hyperbolic cosine function

SYNOPSIS

     double complex
     cacosh(double complex z);

     long double complex
     cacoshl(long double complex z);

     float complex
     cacoshf(float complex z);

DESCRIPTION

     cacosh(z) computes the inverse hyperbolic cosine of the complex floating-point number z, with a branch cut on the interval [-inf, 1] along
     the real axis.

     cacosh() returns values in a half-strip of the complex plane with positive real part and imaginary part in the interval [-Pi, Pi].

     For all complex floating point numbers z, cacosh(conj(z)) = conj(cacosh(z)).

SPECIAL VALUES

     The conjugate symmetry of cacosh() is used to abbreviate the specification of special values.

     cacosh(+-0 + 0i) returns 0 + Pi/2 i.

     cacosh(x + inf i) returns inf + Pi/2 i, for finite x.

     cacosh(x + NaN i) returns NaN + NaN i, for finite nonzero x.

     cacosh(-inf + yi) returns inf + Pi i, for finite positive-signed y.

     cacosh(inf + yi) returns inf + 0i, for finite positive-signed y.

     cacosh(-inf + inf i) returns inf + 3Pi/4 i.

     cacosh(inf + inf i) returns inf + Pi/4 i.

     cacosh(+-inf + NaN i) returns inf + NaN i.

     cacosh(NaN + yi) returns NaN + NaN i, for finite y.

     cacosh(NaN + inf i) returns inf + NaN i.

     cacosh(NaN + NaN i) returns NaN + NaN i.

NOTES

SEE ALSO

     ccosh(3) complex(3)

STANDARDS

     The cacosh() function conforms to ISO/IEC 9899:2011.

4th Berkeley Distribution					 December 11, 2006					 4th Berkeley Distribution
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