hey there
im a bit stuck on executing commands that include the special character '?'. can someone recommend a way on how i would be able to execute it?? i thought the glob function could be useful (still mite be) but upon entering the command
'ls pars?' it listed all the files in the... (1 Reply)
Hi,
I am trying to unload file from a database. Which contains few lines with the character below. Rest of the data was unloaded appropriately.
a) What does this below character means?
b) How can i remove it,
I already have sed '/^$/d'
c) Will this effect the file by any means... (4 Replies)
Hi
I am comparing 2 files (using diff command) with numerical data in them. In the output file I want only the differences which are in file2 but not in file1. Although I am getting the diffences i am also getting special characters in the output file which i do not want. Can somebody help me
For... (3 Replies)
All,
I am trying to grep "-----" from a test when i use this i am getting the below error. What is the reason for this ?????... How can i over come this
##) echo "----------------- test_sys_job -----------------" | grep "-----------------"
grep: illegal option -- -
grep: illegal... (6 Replies)
Hi,
In the shell script, i need to remove the special charater "\" with "\\". For example, i need to replace "D:\FXT\ABC.TXT" with "D:\\FXT\\ABC.TXT".
However, when trying to do something like , i get the below error :-
-->echo "D:\FXT\ABC.TXT" | sed -e 's#\#\\#g'
sed: 0602-404 Function... (7 Replies)
I have below line in a unix file, I want to delete one character after "Â".
20091020.Non-Agency CMO Daily Trade Recap Â~V Hybrids
The result should be :
20091020.Non-Agency CMO Daily Trade Recap  Hybrids
i dont want to use "~V" anywhere in the sed command or any other command, just remove... (1 Reply)
When editing a file, vi displays a special character as ^L. Can you tell me the escaped character to be used in awk? And can that escaped character be used in a regexp in both sed and awk? (7 Replies)
Hi,
on ksh
What does the following do?
grep -v "toolbox" $home_oracle/.profile >$home_oracle/.profile.$$ Thanks.
Please use CODE tags as required by forum rules! (3 Replies)
Discussion started by: big123456
3 Replies
LEARN ABOUT DEBIAN
ncoils
NCOILS(1) User Commands NCOILS(1)NAME
ncoils - prediction of coiled-coil secondary structure elements
SYNOPSIS
ncoils [OPTION] < [FASTA FILE]
ncoils -f < /usr/share/doc/ncoils/1srya.fa
DESCRIPTION
ncoils is a program that compares a sequence to a database of known parallel two-stranded coiled-coils and derives a similarity score. By
comparing this score to the distribution of scores in globular and coiled-coil proteins, the program then calculates the probability that
the sequence will adopt a coiled-coil conformation.
OPTIONS -f, -fasta
fasta output - coils as 'x', like '-x' in seg
-c concise mode - which sequences have any coils (and how many)
-min_seg <int>
for concise mode - only report sequence if >= min coil segments
-min_P <float>
minimum P to define coil segment; DEFAULT = 0.5
-win <int>
window size; DEFAULT = 21
-w weight heptad positions a&d the same as b,c,e,f,g
-v verbose/debug mode - print extra junk
EXAMPLES
"coils-wrap -m MTIDK -i /usr/share/doc/ncoils/1srya.fa -o /tmp/coils.out -r /tmp/coils_raw.txt && less /tmp/coils.out /tmp/coils_raw.txt"
"ncoils -win 14 < /usr/share/doc/ncoils/1srya.fa"
ENVIRONMENT
COILSDIR - specifies the directory containing the file new.mat overriding the default /usr/share/ncoils
FILES
/usr/share/ncoils/*.mat
matrix data files
AUTHOR
R.B. Russell, A.N. Lupas
COPYRIGHT AND LICENSE
GPL
Based on Lupas, Van Dyck & Stock (1991) Science 252,1162-1164
SEE ALSO coils-wrap(1), "usr/share/doc/coils/README", http://www.russelllab.org/cgi-bin/coils/coils-svr.pl <http://www.russelllab.org/cgi-
bin/coils/coils-svr.pl>
A Lupas: Prediction and Analysis of Coiled-Coil Structures. Methods in Enzymology, 266, 513-525, 1996
A. Lupas, M. Van Dyke, and J. Stock: Predicting coiled coils from protein sequences. Science, 252, 1162-1164, 1991
2002 2011-10-29 NCOILS(1)