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Full Discussion: Matching the rows in 2 files
Top Forums UNIX for Dummies Questions & Answers Matching the rows in 2 files Post 302879092 by RudiC on Tuesday 10th of December 2013 11:32:15 AM
Old 12-10-2013
Try also:
Code:
awk 'NR==FNR{T[$4]=$1 FS $2 FS $3; next} {print $0, T[$1], T[$2]}'  file2 file1
AFF3    BCL2 chr1 38177326 38664955 chr6 39603236 39725463
AGTRAP    BRAF chr4 148077060 148088064 chr6 39603236 39725463
AHRR    NCOA2 chr13 74211117 74292309 chr6 39603236 39725463
AKAP9    BRAF chr5 3928185 4080204 chr6 39603236 39725463

Why did line 4 not appear in your desired output?
This User Gave Thanks to RudiC For This Post:
 

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merge(1)																  merge(1)

NAME
merge - three-way file merge SYNOPSIS
merge [-Llabel1 [-Llabel3]] [-p] [-q] file1 file2 file3 DESCRIPTION
merge incorporates all changes that lead from file2 to file3 into file1. The result goes to standard output if -p is present, into file1 otherwise. merge is useful for combining separate changes to an original. Suppose file2 is the original, and both file1 and file3 are modifications of file2. Then merge combines both changes. An overlap occurs if both file1 and file3 have changes in a common segment of lines. On a few older hosts where diff3 does not support the -E option, merge does not detect overlaps, and merely supplies the changed lines from file3. On most hosts, if overlaps occur, merge out- puts a message (unless the -q option is given), and includes both alternatives in the result. The alternatives are delimited as follows: <<<<<<< file1 lines in file1 ======= lines in file3 >>>>>>> file3 If there are overlaps, the user should edit the result and delete one of the alternatives. If the -L label1 and -L label3 options are given, the labels are output in place of the names file1 and file3 in overlap reports. DIAGNOSTICS
Exit status is 0 for no overlaps, 1 for some overlaps, 2 for trouble. IDENTIFICATION
Author: Walter F. Tichy. Revision Number: 1.1.6.2; Release Date: 1993/10/07. Copyright (C) 1982, 1988, 1989 by Walter F. Tichy. Copyright (C) 1990, 1991 by Paul Eggert. SEE ALSO
diff3(1), diff(1), rcsmerge(1), co(1) merge(1)
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