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Full Discussion: Connecting 3 files
Top Forums Shell Programming and Scripting Connecting 3 files Post 302876775 by newbie83 on Tuesday 26th of November 2013 02:06:18 PM
Old 11-26-2013
Strange indeed !!

Code:
# cat file1.txt
[OR] KOG0001 Ubiquitin and ubiquitin-like proteins
  ath:  At1g31340
  ath:  At1g53930
  ath:  At1g53950
[J] KOG0002 60s ribosomal protein L39
  ath:  At2g36170
  ath:  At3g02190

# cat file2.txt
INFORMATION STORAGE AND PROCESSING
 [J] Translation, ribosomal structure and biogenesis
 [A] RNA processing and modification
 [K] Transcription
 [L] Replication, recombination and repair
 [B] Chromatin structure and dynamics

CELLULAR PROCESSES AND SIGNALING
 [D] Cell cycle control, cell division, chromosome partitioning
 [Y] Nuclear structure
 [V] Defense mechanisms
 [T] Signal transduction mechanisms
 [M] Cell wall/membrane/envelope biogenesis
 [N] Cell motility
 [Z] Cytoskeleton
 [W] Extracellular structures
 [U] Intracellular trafficking, secretion, and vesicular transport
 [O] Posttranslational modification, protein turnover, chaperones

METABOLISM
 [C] Energy production and conversion
 [G] Carbohydrate transport and metabolism
 [E] Amino acid transport and metabolism
 [F] Nucleotide transport and metabolism
 [H] Coenzyme transport and metabolism
 [I] Lipid transport and metabolism
 [P] Inorganic ion transport and metabolism
 [Q] Secondary metabolites biosynthesis, transport and catabolism

POORLY CHARACTERIZED
 [R] General function prediction only
 [S] Function unknown [root@scalemp fescue_genome]# more file2.txt
INFORMATION STORAGE AND PROCESSING
 [J] Translation, ribosomal structure and biogenesis
 [A] RNA processing and modification
 [K] Transcription
 [L] Replication, recombination and repair
 [B] Chromatin structure and dynamics

CELLULAR PROCESSES AND SIGNALING
 [D] Cell cycle control, cell division, chromosome partitioning
 [Y] Nuclear structure
 [V] Defense mechanisms
 [T] Signal transduction mechanisms
 [M] Cell wall/membrane/envelope biogenesis
 [N] Cell motility
 [Z] Cytoskeleton
 [W] Extracellular structures
 [U] Intracellular trafficking, secretion, and vesicular transport
 [O] Posttranslational modification, protein turnover, chaperones

METABOLISM
 [C] Energy production and conversion
 [G] Carbohydrate transport and metabolism
 [E] Amino acid transport and metabolism
 [F] Nucleotide transport and metabolism
 [H] Coenzyme transport and metabolism
 [I] Lipid transport and metabolism
 [P] Inorganic ion transport and metabolism
 [Q] Secondary metabolites biosynthesis, transport and catabolism

POORLY CHARACTERIZED
 [R] General function prediction only
 [S] Function unknown


# cat file3.txt
At1g53930
At2g36170
# ./prog.awk
#

 

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RLAM(1) 						      General Commands Manual							   RLAM(1)

NAME
rlam - laminate records from multiple files SYNOPSIS
rlam [ -tS ][ -u ][ -iaN | -ifN | -idN | -iiN | -iwN | -ibN ] input1 input2 .. DESCRIPTION
Rlam simply joins records (or lines) from multiple inputs, separating them with the given string (TAB by default). Different separators may be given for different files by specifying additional -t options in between each file name. Note that there is no space between this option and its argument. If none of the input files uses an ASCII separator, then no end-of-line character will be printed, either. An input is either a stream or a command. Commands are given in quotes, and begin with an exclamantion point ('!'). If the inputs do not have the same number of lines, then shorter files will stop contributing to the output as they run out. The -ia option may be used to specify ASCII input (the default), or the -if option may be used to indicated binary IEEE 32-bit floats on input. Similarly, the -id and -ii options may be used to indicate binary 64-bit doubles or integer words, respectively. The -iw option specifies 2-byte short words, and the -ib option specifies bytes. If a number is immediately follows any of these options, then it indi- cates that multiple such values are expected for each record. For example, -if3 indicates three floats per input record for the next named input. In the case of the -ia option, no number indicates one line per input record, and numbers greater than zero indicate that many characters exactly per record. For binary input formts, no number implies one value per record. For anything other than EOL-separated input, the default tab separator is reset to the empty string. A hyphen ('-') by itself can be used to indicate the standard input, and may appear multiple times. The -u option forces output after each record (i.e., one run through inputs). EXAMPLE
To join files output1 and output2, separated by a comma: rlam -t, output1 output2 To join a file with line numbers (starting at 0) and its reverse: cnt `wc -l < lam.c` | rlam - -t: lam.c -t '!tail -r lam.c' To join four data files, each having three doubles per record: rlam -id3 file1.dbl file2.dbl file3.dbl file4.dbl > combined.dbl AUTHOR
Greg Ward SEE ALSO
cnt(1), histo(1), neaten(1), rcalc(1), tabfunc(1), total(1) RADIANCE
7/8/97 RLAM(1)
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