Connecting 3 files Post: 302876772

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Top Forums Shell Programming and Scripting Connecting 3 files Post 302876772 by Yoda on Tuesday 26th of November 2013 01:55:02 PM

11-26-2013

Moderator

Quote:

Originally Posted by newbie83

This doesn't produce any output, even with the sample data.

Not sure why! This is what I get.

Sample input datas:

Code:

$ cat file1.txt
[OR] KOG0001 Ubiquitin and ubiquitin-like proteins
  ath:  At1g31340
  ath:  At1g53930
  ath:  At1g53950
[J] KOG0002 60s ribosomal protein L39
  ath:  At2g36170
  ath:  At3g02190

$ cat file2.txt
INFORMATION STORAGE AND PROCESSING
 [J] Translation, ribosomal structure and biogenesis
 [A] RNA processing and modification
 [K] Transcription
 [L] Replication, recombination and repair
 [B] Chromatin structure and dynamics

CELLULAR PROCESSES AND SIGNALING
 [D] Cell cycle control, cell division, chromosome partitioning
 [Y] Nuclear structure
 [V] Defense mechanisms
 [T] Signal transduction mechanisms
 [M] Cell wall/membrane/envelope biogenesis
 [N] Cell motility
 [Z] Cytoskeleton
 [W] Extracellular structures
 [U] Intracellular trafficking, secretion, and vesicular transport
 [O] Posttranslational modification, protein turnover, chaperones

METABOLISM
 [C] Energy production and conversion
 [G] Carbohydrate transport and metabolism
 [E] Amino acid transport and metabolism
 [F] Nucleotide transport and metabolism
 [H] Coenzyme transport and metabolism
 [I] Lipid transport and metabolism
 [P] Inorganic ion transport and metabolism
 [Q] Secondary metabolites biosynthesis, transport and catabolism

POORLY CHARACTERIZED
 [R] General function prediction only
 [S] Function unknown

$ cat file3.txt
At1g53930
At2g36170

Output:

Code:

$ ./prog.awk
At1g53930|O|Posttranslational modification, protein turnover, chaperones |CELLULAR PROCESSES AND SIGNALING
At2g36170|J|Translation, ribosomal structure and biogenesis |INFORMATION STORAGE AND PROCESSING

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t_close

t_close(3)						     Library Functions Manual							t_close(3)

NAME

       t_close() - close a transport endpoint

SYNOPSIS

DESCRIPTION

       The  function  informs  the  transport  provider that the user is finished with the transport endpoint specified by fd, and frees any local
       library resources associated with the endpoint.	also closes the file descriptor associated with the transport endpoint.

       should be called from the state (see t_getstate(3)).  However, this function does not check state information, so it may be called from any
       state to close a transport endpoint.  If this occurs, the local library resources associated with the endpoint will be freed automatically.
       will also be issued for that file descriptor. The close will be abortive if no other process has that file open and will break  any  trans-
       port connection that may be associated with that endpoint.

   Valid States
       All - apart from

   Fork Safety
       is not fork-safe.

RETURN VALUE

       Upon successful completion, a value of 0 is returned.  Otherwise, a value of -1 is returned and is set to indicate the error.

ERRORS

       [TBADF]		   The specified file descriptor does not refer to a transport endpoint.

       [TPROTO] 	   (XTI  only)	This error indicates that a communication problem has been detected between XTI and the transport provider
			   for which there is no suitable XTI (

SEE ALSO

       t_getstate(3), t_open(3), t_unbind(3), thread_safety(5).

STANDARDS CONFORMANCE

																	t_close(3)

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