Sponsored Content
Top Forums Shell Programming and Scripting Filter records based on 2nd file Post 302875145 by disedorgue on Monday 18th of November 2013 03:14:39 PM
Old 11-18-2013
Hi,
Try it:
Code:
$ cat chr1.txt
9927    chr1    83      T       C
9927    chr1    92      A       C
9927    chr1    97      A       C
9927    chr2    262     C       G
9927    chr2    292     C       G
9927    chr2    367     C       G
$ cat chr2.txt
chr1    46    84
chr1    95    227
chr2    261  326

Code:
$ sed 's/  / /g' <(awk '{printf("xxxx %s %s\nyyyy %s %s\n",$1,$2,$1,$3)}' chr2.txt) chr1.txt | sort -k2 -n -k3 | sed -n '/xxxx/,/yyyy/{/xxxx\|yyyy/!p;}'
9927  chr1  83   T    C
9927  chr1  97   A    C
9927  chr2  262   C    G
9927  chr2  292   C    G

Regards.
This User Gave Thanks to disedorgue For This Post:
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

filter out all the records which are having space in the 8th filed of my file

I have a file which is having fileds separtaed by delimiter. Ex: C;4498;qwa;cghy;;;;40;;222122 C;4498;sample;city;;;;34 2;;222123 C;4498;qwe;xcbv;;;;34-2;;222124 C;4498;jj;sffz;;;;41;;222120 C;4498;eert;qwq;;;;34 A;;222125 C;4498;jj;szxzzd;;;;34;;222127 out of these records I... (3 Replies)
Discussion started by: indusri
3 Replies

2. Shell Programming and Scripting

Filter records in a file using AWK

I want to filter records in one of my file using AWK command (or anyother command). I am using the below code awk -F@ '$1=="0003"&&"$2==20100402" print {$0}' $INPUT > $OUTPUT I want to pass the 0003 and 20100402 values through a variable. How can I do this? Any help is much... (1 Reply)
Discussion started by: gpaulose
1 Replies

3. Shell Programming and Scripting

Apply condition on fixed width file and filter records

Dear members.. I have a fixed width file. Requirement is as below:- 1. Scan each record from this fixed width file 2. Check for value under field no "6" equals to "ABC". If yes, then filter this record into the output file Please suggest a unix command to achieve this, my guess awk might... (6 Replies)
Discussion started by: sureshg_sampat
6 Replies

4. UNIX for Dummies Questions & Answers

Filter records in a huge text file from a filter text file

Hi Folks, I have a text file with lots of rows with duplicates in the first column, i want to filter out records based on filter columns in a different filter text file. bash scripting is what i need. Data.txt Name OrderID Quantity Sam 123 300 Jay 342 498 Kev 78 2500 Sam 420 50 Vic 10... (3 Replies)
Discussion started by: tech_frk
3 Replies

5. Shell Programming and Scripting

Shell script to filter records in a zip file that contains matching columns from another file

Not sure if this is the correct forum for this question. I have two files. file1.zip, file2 Input: file1.zip col1, col2 , col3 a , b , 0:0:0:0:0:c436:9346:d40b x, y, 0:0:0:0:0:880:39f9:c9a7 m, n , 0:0:0:0:0:80c7:9161:fe00 file2.txt col1 c4:36:93:46:d4:0b... (1 Reply)
Discussion started by: anil.v
1 Replies

6. Shell Programming and Scripting

Filter tab file based on column value

Hello I have a tab text file with many columns and have to filter rows ONLY if column 22 has the value of '0', '1', '2' or '3' (out of 0-5). If Column 22 has value '0','1', '2' or '3' (highlighted below), then remove anything less than 10 and greater 100 (based on column 5) AND remove anything... (1 Reply)
Discussion started by: nans
1 Replies

7. Shell Programming and Scripting

Awk/sed/cut to filter out records from a file based on criteria

I have two files and would need to filter out records based on certain criteria, these column are of variable lengths, but the lengths are uniform throughout all the records of the file. I have shown a sample of three records below. Line 1-9 is the item number "0227546_1" in the case of the first... (15 Replies)
Discussion started by: MIA651
15 Replies

8. Shell Programming and Scripting

Filter duplicate records from csv file with condition on one column

I have csv file with 30, 40 columns Pasting just three column for problem description I want to filter record if column 1 matches CN or DN then, check for values in column 2 if column contain 1235, 1235 then in column 3 values must be sequence of 2345, 2345 and if column 2 contains 6789, 6789... (5 Replies)
Discussion started by: as7951
5 Replies

9. Shell Programming and Scripting

CSV File:Filter duplicate records from column1 & another column having unique record

Hi Experts, I have csv file with 30, 40 columns Pasting just 2 column for problem description. Need to print error if below combination is not present in file check for column-1 (DocumentNumber) and filter columns where value in DocumentNumber field is same. For all such rows, the field... (7 Replies)
Discussion started by: as7951
7 Replies

10. UNIX for Beginners Questions & Answers

Filter records from a log file based on timestamp

Dear Experts, I have a log file that contains a timestamp, I would like to filter record from that file based on timestamp. For example refer below file - cat sample.txt Jan 19 20:51:48 mukul-Vostro-14-3468 systemd: pam_unix(systemd-user:session): session opened for user root by (uid=0)... (6 Replies)
Discussion started by: mukulverma2408
6 Replies
mdbGeneral(5)							 The m17n Library						     mdbGeneral(5)

NAME
mdbGeneral - General Format DESCRIPTION
The mdatabase_load() function returns the data specified by tags in the form of plist if the first tag is not Mchartable nor Mcharset. The keys of the returned plist are limited to Minteger, Msymbol, Mtext, and Mplist. The type of the value is unambiguously determined by the corresponding key. If the key is Minteger, the value is an integer. If the key is Msymbol, the value is a symbol. And so on. A number of expressions are possible to represent a plist. For instance, we can use the form (K1:V1, K2:V2, ..., Kn:Vn) to represent a plist whose first property key and value are K1 and V1, second key and value are K2 and V2, and so on. However, we can use a simpler expression here because the types of plists used in the m17n database are fairly restricted. Hereafter, we use an expression, which is similar to S-expression, to represent a plist. (Actually, the default database loader of the m17n library is designed to read data files written in this expression.) The expression consists of one or more elements. Each element represents a property, i.e. a single element of a plist. Elements are separated by one or more whitespaces, i.e. a space (code 32), a tab (code 9), or a newline (code 10). Comments begin with a semicolon (;) and extend to the end of the line. The key and the value of each property are determined based on the type of the element as explained below. o INTEGER An element that matches the regular expression -?[0-9]+ or 0[xX][0-9A-Fa-f]+ represents a property whose key is Minteger. An element matching the former expression is interpreted as an integer in decimal notation, and one matching the latter is interpreted as an integer in hexadecimal notation. The value of the property is the result of interpretation. For instance, the element 0xA0 represents a property whose value is 160 in decimal. o SYMBOL An element that matches the regular expression [^-0-9(]([^()]|.)+ represents a property whose key is Msymbol. In the element, , , , and e are replaced with tab (code 9), newline (code 10), carriage return (code 13), and escape (code 27) respectively. Other characters following a backslash is interpreted as it is. The value of the property is the symbol having the resulting string as its name. For instance, the element abc def represents a property whose value is the symbol having the name 'abc def'. o MTEXT An element that matches the regular expression '([^']|')*' represents a property whose key is Mtext. The backslash escape explained above also applies here. r, each part in the element matching the regular expression [xX][0-9A-Fa-f][0-9A-Fa-f] is replaced with its hexadecimal interpretation. After having resolved the backslash escapes, the byte sequence between the double quotes is interpreted as a UTF-8 sequence and decoded into an M-text. This M-text is the value of the property. o PLIST Zero or more elements surrounded by a pair of parentheses represent a property whose key is Mplist. Whitespaces before and after a parenthesis can be omitted. The value of the property is a plist, which is the result of recursive interpretation of the elements between the parentheses. SYNTAX NOTATION
In an explanation of a plist format of data, a BNF-like notation is used. In the notation, non-terminals are represented by a string of uppercase letters (including '-' in the middle), terminals are represented by a string surrounded by '"'. Special non-terminals INTEGER, SYMBOL, MTEXT and PLIST represents property integer, symbol, M-text, or plist respectively. EXAMPLE
Here is an example of database data that is read into a plist of this simple format: DATA-FORMAT ::= [ INTEGER | SYMBOL | MTEXT | FUNC ] * FUNC ::= '(' FUNC-NAME FUNC-ARG * ')' FUNC-NAME ::= SYMBOL FUNC-ARG ::= INTEGER | SYMBOL | MTEXT | '(' FUNC-ARG ')' For instance, a data file that contains this text matches the above syntax: abc 123 (pqr 0xff) "m and is read into this plist: 1st element: key: Msymbol, value: abc 2nd element: key: Minteger, value: 123 3rd element: key: Mplist, value: a plist of these elements: 1st element: key Msymbol, value: pgr 2nd element: key Minteger, value: 255 4th element: key: Mtext, value: m"text 5th element: key: Mplist, value: a plist of these elements: 1st element: key: Msymbol, value: __ 2nd element: key: Mplist, value: a plist of these elements: 1st element: key: Mtext, value: string 2nd element: key: Msymbol, value: xyz 3rd element: key: Minteger, value: -456 COPYRIGHT
Copyright (C) 2001 Information-technology Promotion Agency (IPA) Copyright (C) 2001-2011 National Institute of Advanced Industrial Science and Technology (AIST) Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License <http://www.gnu.org/licenses/fdl.html>. Version 1.6.2 12 Jan 2011 mdbGeneral(5)
All times are GMT -4. The time now is 05:21 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy