Hey guys...
Running Solaris 5.6, trying to write an easy /sbin/sh script. I want to run several commands, then have the results appear on one line. Additionally, I want the results to be separated by <TAB>.
Let's say that my script calls three commands (date, pwd, and hostname), I would want... (2 Replies)
I have a tab-Delimited file:
Eg:
'test' file contains:
a<tab>b<tab>c<tab>....
Based on certain condition, I wanna increase the number of lines of this file.How do I do that
Eg:
If some value in the database is 1 then one line in 'test' file is fine..
If some value in the database is 2... (1 Reply)
Hello,
Can someone help me to do this with awk or sed? I have a file with multiple lines, each line has many fields separated with a tab. I would like to add one more field holding 'na' in between the first and second fields.
old file looks like,
1, field1 field2 field3 ...
2, field1... (7 Replies)
Hello,
I have about 100 files in a directory with fields which are tab delimited. I would like to append the file name as the first field and it has to be done as many times as the total lines in the file.
For example,
myFile1.txt has the following data:
1 x y z
2 a b ... (5 Replies)
Hello gurus,
I have a file in a tab delimited format and a header row. I need a code to delete the header in the file, and convert the file to a fixed width format, with all the columns aligned. Below is a sample of the file:... (4 Replies)
Dear All,
I would like to find an automatic way to add a given code which belong to a class at the end of the column , for example this is my input file:
0610009O20Rik
V$VMYB_01 310 (+) 1 0.971 v-Myb
V$EVI1_04 782 (-) 0.763 0.834 Evi-1
V$ELK1_02 1966 (-) 1 0.984 Elk-1... (4 Replies)
Hi all ,
I have a file having 12 columns tab delimited .
I need to read this file and remove the column 3 and column 4 and insert a word in column 3 as "AVIALABLE "
Is there a way to do this . I am trying like below
Thanks
DJ
cat $FILENAME|awk -F"\t" '{ print $1 "\t... (3 Replies)
Hello,
I have 40 data files where the first three columns are the same (in theory) and the 4th column is different. Here is an example of three files,
file 2: A_f0_r179_pred.txt
Id Group Name E0
1 V N(,)'1 0.2904
2 V N(,)'2 0.3180
3 V N(,)'3 0.3277
4 V N(,)'4 0.3675
5 V N(,)'5 0.3456
... (8 Replies)
I thought I had this figured out but was wrong so am humbly asking for help.
The task is to add an additional column to FILE 1 based on records in FILE 2.
The key is in COLUMN 1 for FILE 1 and in COLUMN 1 OR COLUMN 2 for FILE 2.
I want to add the third column from FILE 2 to the beginning of... (8 Replies)
Discussion started by: andmal
8 Replies
LEARN ABOUT DEBIAN
vcf-isec
VCF-ISEC(1) User Commands VCF-ISEC(1)NAME
vcf-isec - create intersections, unions, complements on bgzipped and tabix indexed VCF or tab-delimited files
SYNOPSIS
vcf-isec [OPTIONS] file1.vcf file2.vcf ...
DESCRIPTION
About: Create intersections, unions, complements on bgzipped and tabix indexed VCF or tab-delimited files.
Note that lines from all files can be intermixed together on the output, which can yield unexpected results.
OPTIONS -C, --chromosomes <list|file>
Process the given chromosomes (comma-separated list or one chromosome per line in a file).
-c, --complement
Output positions present in the first file but missing from the other files.
-d, --debug
Debugging information
-f, --force
Continue even if the script complains about differing columns.
-o, --one-file-only
Print only entries from the left-most file. Without -o, all unique positions will be printed.
-n, --nfiles [+-=]<int>
Output positions present in this many (=), this many or more (+), or this many or fewer (-) files.
-p, --prefix <path>
If present, multiple files will be created with all possible isec combinations. (Suitable for Venn Diagram analysis.)
-t, --tab <chr:pos:file>
Tab-delimited file with indexes of chromosome and position columns. (1-based indexes)
-w, --win <int>
In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be it a
SNP or an indel).
-h, -?, --help
This help message.
EXAMPLES
bgzip file.vcf; tabix -p vcf file.vcf.gz bgzip file.tab; tabix -s 1 -b 2 -e 2 file.tab.gz
vcf-isec 0.1.5 July 2011 VCF-ISEC(1)