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Full Discussion: Columns to Rows - Transpose - Special Condition
Top Forums Shell Programming and Scripting Columns to Rows - Transpose - Special Condition Post 302873897 by jacobs.smith on Wednesday 13th of November 2013 11:55:24 AM
Old 11-13-2013
Columns to Rows - Transpose - Special Condition
Hi Friends,

Hope all is well.

I have an input file like this

Code:
a gene1 10
b gene1 2
c gene2 20
c gene3 10
d gene4 5
e gene5 6

Steps to reach output.

1. Print unique values of column1 as column of the matrix, which will be

Code:
a
b
c
d
e



2. Print unique values of column2 as row of the matrix, which will be

Code:
gene1 gene2 gene3 gene4 gene5

3. Now print column3 values in the matrix, which will be my final output

Code:
     gene1 gene2 gene3 gene4 gene5
a   10      0        0       0        0
b   2        0        0       0        0
c   0        20      10      0        0
d   0        0        0       5        0
e   0        0        0       0        6

My special condition is nothing but, if there is no value for a combination, print that value to be 0. My input file has more than 50K records. Please let me know if you have any questions. Thanks in advance.

The spacing is messed up while posting this thread. But, my output columns are separated by a tab.
 

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LEARN ABOUT CENTOS

paps

PAPS(1) 						      General Commands Manual							   PAPS(1)

NAME

       paps - UTF-8 to PostScript converter using Pango

SYNOPSIS

       paps [options] files...

DESCRIPTION

       paps reads a UTF-8 encoded file and generates a PostScript language rendering of the file. The rendering is done by creating outline curves
       through the pango ft2 backend.

OPTIONS

       These programs follow the usual GNU command line syntax, with long options starting with  two  dashes  (`-').   A  summary  of  options	is
       included below.

       --landscape
	      Landscape output. Default is portrait.

       --columns=cl
	      Number of columns output. Default is 1.

       --font=desc
	      Set the font description. Default is Monospace 12.

       --rtl  Do rtl layout.

       --paper ps
	      Choose paper size. Known paper sizes are legal, letter, a4. Default is A4.

       --bottom-margin=bm
	      Set bottom margin in postscript points (1/72 inch). Default is 36.

       --top-margin=tm
	      Set top margin. Default is 36.

       --left-margin=lm
	      Set left margin. Default is 36.

       --right-margin=rm
	      Set right margin. Default is 36.

       --help Show summary of options.

       --header
	      Draw page header for each page.

       --markup
	      Interpret the text as pango markup.

       --encoding=ENCODING
	      Assume the documentation encoding is ENCODING.

       --lpi  Set the lines per inch. This determines the line spacing.

       --cpi  Set the characters per inch. This is an alternative method of specifying the font size.

       --stretch-chars
	      Indicates  that  characters  should be stretched in the y-direction to fill up their vertical space. This is similar to the texttops
	      behaviour.

AUTHOR

       paps was written by Dov Grobgeld <dov.grobgeld@gmail.com>.

       This manual page was written by Lior Kaplan <kaplan@debian.org>, for the Debian project (but may be used by others).

								  April  17, 2006							   PAPS(1)
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