I have a shell script like the one below but cannot get it working:
I am trying to run a program called SHAPEIT. When I run the shell script, I get the following error:
I have the following files in my root directory for chromosome 2 with full permissions:
My shell script is clearly reading the chr2.unphased.fam/bed/bim files, but not my chr2.alignments.snp.strand.exclude. Any ideas why this is? Thanks for any help.
Last edited by Scott; 11-11-2013 at 02:58 PM..
Reason: Add code tags; obfuscate data
I need to write a Unix shell script which will list top 10 files in a directory tree on basis of size. i.e. first file should be the biggest in the whole directory and all its sub directories.
Please suggest any ideas (10 Replies)
Hi All
i am writing a shell script which will search for a string "expires". once the search string is found it has to give the email address as the output and send an email to the person
This is basically to find the encrypetd keys which are loaded in the unix server
Below are sample... (10 Replies)
Hello All,
After a HDD crash, I would like to selectively back up all my script files. What is the most efficient way to do this?
The pseudo code I was thinking of was something like this:
for a in `find ./ -name "*"`
do
if (file $a) == Bourne|Tcsh|... then
echo $a >>... (7 Replies)
Hell Guys,
Being a newbie, I need some help in finding a certain string from a log file of thousands of lines (around 30K lines) and have the output in a separate file.
Below is the file output -
10.155.65.5 - - "POST... (15 Replies)
so I've made a shell script that downloads 6 files in succession from a given url, then deletes them. Now I want to time the script, and the average time it uses by running it ~100 times. My problem is tho, how do I store the time it takes for each run through of the script? I know time writes to... (3 Replies)
Hi,
There are 2000 jobs in the list and i need to draw their status. I put all the jobs in the list and trying to read one by one from the list and to find out the status.
Help me out in correcting the script.
#!/bin/csh
for a in $(cat Jobs_List.txt);
do
source <<path>>
autorep -j $a... (1 Reply)
I see lot of request posted in internet to find out the day of nth week in a Month.
example:
what is the date of 3rd Sunday in October
What is the date of 2nd Friday in June 2012
what is the date of 4th Saturday in January 2011..etc..
The below shell script is used to find out the... (1 Reply)
Dear All,
I have a situation where I want to copy some files of type .txt.
These files are o/p from one program. Some of the files are named as
fileName .txt instead of fileName.txt
after fileName by mistake I have specified "space". Now I want to move these files as follows.
mv fileName*... (13 Replies)
I very new to C Shell. I am trying to do is read from Command line.
Find the if the file is zip, .txt, symbloic link,pipe, unknow (if file is not zip, txt, sy....)
here is what I what got so far. I am very stuck atm Please help me out :
If the file is symblooc link what file is link to
... (12 Replies)
Discussion started by: madbull41
12 Replies
LEARN ABOUT SUNOS
shells
shells(4) File Formats shells(4)NAME
shells - shell database
SYNOPSIS
/etc/shells
DESCRIPTION
The shells file contains a list of the shells on the system. Applications use this file to determine whether a shell is valid. See getuser-
shell(3C). For each shell a single line should be present, consisting of the shell's path, relative to root.
A hash mark (#) indicates the beginning of a comment; subsequent characters up to the end of the line are not interpreted by the routines
which search the file. Blank lines are also ignored.
The following default shells are used by utilities: /bin/bash, /bin/csh, /bin/jsh, /bin/ksh, /bin/pfcsh, /bin/pfksh, /bin/pfsh, /bin/sh,
/bin/tcsh, /bin/zsh, /sbin/jsh, /sbin/sh, /usr/bin/bash, /usr/bin/csh, /usr/bin/jsh, /usr/bin/ksh, /usr/bin/pfcsh, /usr/bin/pfksh,
/usr/bin/pfsh, and /usr/bin/sh, /usr/bin/tcsh, /usr/bin/zsh. Note that /etc/shells overrides the default list.
Invalid shells in /etc/shells may cause unexpected behavior (such as being unable to log in by way of ftp(1)).
FILES
/etc/shells lists shells on system
SEE ALSO vipw(1B), ftpd(1M), sendmail(1M), getusershell(3C), aliases(4)SunOS 5.10 4 Jun 2001 shells(4)