I guess/hope you have
otherwise your search in *.txt includes patterns.txt and output.txt - with random results.
The following grep -f patternfileis easier and avoids duplicates (in case multiple patterns match)
For separate output files have a loop:
I want to get a list of all the files in the current directory that have two patterns. I can do first grep of one pattern and then with the output do the grep of the second pattern.
if the output of 1st pattern search results in many files, it is very difficult to do a grep of the 2nd pattern for... (1 Reply)
Hi,
Can we grep multiple patterns in UNIX.
for example:
cat /x/y/oratab | grep -i "pattern1|pattern2" .... etc
I require the syntax for multiple patterns. | is not working as I explained in example.
Malay (4 Replies)
Hi All,
I have a file. I need to find multiple patterns in a row and need those rows to divert to new file.
I tried using grep -e / -E / -F options as given in man.
But its not working.
==> cat testgrep.txt
william,fernandes,xxxxx
mark,morsov,yyyy
yy=,xx=
yyyy=,xxxx==
==>... (7 Replies)
I'm trying to parse COBOL code to combine variables into one string. I have two variable names that get literals moved into them and I'd like to use sed, awk, or similar to find these lines and combine the variables into the final component. These variable names are always VAR1 and VAR2. For... (8 Replies)
I have a file with many rows.
I want to grep for multiple patterns from the file.
For eg:
XX=123|YY=222|ZZ=566
AA=123|EE=222|GG=566
FF=123|RR=222|GG=566
DD=123|RR=222|GG=566
I want the lines which has both XX and ZZ.
I know I can get it like this.
grep XX file | grep YY
But... (10 Replies)
I want to search files (basically .cc files) in /xx folder and subfolders.
Those files (*.cc files) must contain #include "header.h" AND x() function.
I am writing it another way to make it clear,
I wanna list of *.cc files that have 'header.h' & 'x()'. They must have two strings, header.h... (2 Replies)
Hi,
I have to write one script that has to search a list of numbers in certain zipped files.
For eg. one file file1.txt contains the numbers. File1.txt contains 5,00,000 numbers and I have to search each number in zipped files(The number of zipped files are around 1000 each file is 5 MB)
I have... (10 Replies)
Hi,
I have a file containing list of strings like
i:
Pink
Yellow
Green
and I have file having list of file names in a directory
j :
a
b
c
d
Where j contains of a ,b,c,d are as follows
a:
Pink (3 Replies)
I am trying to grep a variable with multiple lines with multiple patterns
below is the pattern list in a variable called "grouplst", each pattern is speerated by "|"
grouplst="example1|example2|example3|example4|example5|example6|example7"
I need to use the patterns above to grep a... (2 Replies)
I am able to grep multiple patterns which stored in a files. However, how could we replace the whole line with either the pattern or new string?
For example:
pattern_file: *Info in the () is not part of the pattern file. They are the intended name to replace the whole line after the pattern... (5 Replies)
Discussion started by: wxboo
5 Replies
LEARN ABOUT DEBIAN
csv2mipe
CSV2MIPE(1) User Contributed Perl Documentation CSV2MIPE(1)NAME
csv2mipe.pl - Generates MIPE file based on 3 tab-delimited files
based on MIPE version v1.1
arguments: * tab-delimited file with PCR-level data
* tab-delimited file with SNP-level data
* tab-delimited file with assay-level data
Columns in file with PCR-level data:
pcr_id
pcr_modified (might be multiple, divided by semi-colon ";")
pcr_project (might be multiple, divided by semi-colon ";")
pcr_researcher (might be multiple, divided by semi-colon ";")
pcr_species
source_type
source_id
design_seq
primer1_oligo
primer1_seq
primer1_tm
primer2_oligo
primer2_seq
primer2_tm
design_remark (might be multiple, divided by semi-colon ";")
use_seq
use_revcomp
use_remark (might be multiple, divided by semi-colon ";")
pcr_remark (might be multiple, divided by semi-colon ";")
Columns in file with SNP-level data:
pcr_id
snp_id
snp_pos
snp_amb
snp_remark (might be multiple, divided by semi-colon ";")
Columns in file with assay-level data:
pcr_id
snp_id
assay_id
assay_type
assay_enzyme
assay_oligo
assay_specific
assay_tail
assay_strand
assay_remark (might be multiple, divided by semi-colon ";")
SYNOPSIS
csv2mipe.pl <pcr_file.csv> <snp_file.csv> <assay_file.csv>
ADDITIONAL INFO
See http://mipe.sourceforge.net
AUTHOR
Jan Aerts (jan.aerts@bbsrc.ac.uk)
perl v5.14.2 2005-07-20 CSV2MIPE(1)