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Full Discussion: Parsing a list
Top Forums Shell Programming and Scripting Parsing a list Post 302861867 by narachaid on Wednesday 9th of October 2013 05:49:41 PM
Old 10-09-2013
Parsing a list

Hello,

I have a very long list of file (see input below). I only need the first "chunk" of the line before the space and omit the rest. Also, the > sign needs to be excluded. Can anyone help me please?

Thank you so much!

INPUT:
Code:
>gi|24976465|gb|AL935113.1|AL935113 AL935113 Homo sapiens library
>gi|24978364|gb|AL93981336.1|AL93981336 AL93981336 Homo sapiens library
>gi|24973415|gb|AL931542.1|AL931542 AL931542 Homo sapiens library
>gi|24939375|gb|AL93376241.1|AL93376241 AL93376241 Homo sapiens library
>gi|24937965|gb|AL9343716.1|AL9343716 AL9343716 Homo sapiens library

OUTPUT:
Code:
gi|24976465|gb|AL935113.1|AL935113
gi|24978364|gb|AL93981336.1|AL93981336
gi|24973415|gb|AL931542.1|AL931542
gi|24939375|gb|AL93376241.1|AL93376241
gi|24937965|gb|AL9343716.1|AL9343716


Last edited by Scott; 10-09-2013 at 06:51 PM.. Reason: Added Code Tags [6th time]
 

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HTML::Microformats::Format::species(3pm)		User Contributed Perl Documentation		  HTML::Microformats::Format::species(3pm)

NAME
HTML::Microformats::Format::species - the species microformat SYNOPSIS
use HTML::Microformats::DocumentContext; use HTML::Microformats::Format::hCard; my $context = HTML::Microformats::DocumentContext->new($dom, $uri); my @objects = HTML::Microformats::Format::species->extract_all( $dom->documentElement, $context); foreach my $species (@objects) { print $species->get_binomial . " "; } DESCRIPTION
HTML::Microformats::Format::species inherits from HTML::Microformats::Format. See the base class definition for a description of property getter/setter methods, constructors, etc. MICROFORMAT
The species documentation at <http://microformats.org/wiki/species> is very sketchy. This module aims to be roughly compatible with the implementation of species in the Operator extension for Firefox, and data published by the BBC and Wikipedia. Here are some brief notes on how is has been impemented: o The root class name is 'biota'. o Important properties are 'vernacular' (alias 'common-name', 'cname' or 'fn'), 'binomial', 'trinomial', 'authority'. o Also recognised are 'class', 'division', 'family', 'genus', 'kingdom', 'order', 'phylum', 'species' and various other ranks. o Because some of these property names are fairly generic, you can alternatively use them in a prefixed form: 'taxo-class', 'taxo-division', etc. o If an element with class 'biota' has no recognised properties within it, the entire contents of the element are taken to be a binomial name. This allows for very simple markup: <i class="biota">Homo sapiens</i> o The meaning of some terminology differs when used by botanists and zoologists. You can add the class 'botany' or 'zoology' to the root element to clarify your usage. e.g. <i class="biota zoology">Homo sapiens</i> An example: <span class="biota zoology"> <i class="binomial"> <span class="genus">Homo</span> <span class="species">sapiens</span> <span class="subspecies">sapiens</span> </i> (<span class="authority">Linnaeus, 1758</span>) a.k.a. <span class="vernacular">Humans</span> </span> RDF OUTPUT
RDF output uses the Biological Taxonomy Vocabulary 0.2 (<http://purl.org/NET/biol/ns#>). BUGS
Please report any bugs to <http://rt.cpan.org/>. SEE ALSO
HTML::Microformats::Format, HTML::Microformats. AUTHOR
Toby Inkster <tobyink@cpan.org>. COPYRIGHT
Copyright 2008-2011 Toby Inkster This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. DISCLAIMER OF WARRANTIES
THIS PACKAGE IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF MERCHANTIBILITY AND FITNESS FOR A PARTICULAR PURPOSE. perl v5.14.2 2011-12-06 HTML::Microformats::Format::species(3pm)
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