Thank you so much!But is it perl or shell script? I am sorry for the easy questions. I usually working on Perl, but it is not like the regular one. How can I run it? Run under the linux command line?
---------- Post updated at 07:55 PM ---------- Previous update was at 07:37 PM ----------
thank you so much for the reply, but I am really a newbie in coding, could u please add some comment on each line so that it is easy for me to refer and adjust. Thank you so much and I really appreciate all the help.
It's unix commandline, but also works in a shell script.
If you make a new file, put:
As the first line, then the code below in it. You'll be able to run it as a script.
Otherwise, can just copy paste the entire thing into your shell on the commandline at it'll work.
Version with comments:
I suspect that perl would be able to do this a little more effiicently by loading the name.txt file into memory, allowing faster checks. But I usually only reach for perl if shell can't do it within a reasonable amount of time/effort.
Well, I hope this way you will respond to my inquiries.
I have 4 unix servers,with static ips (though i dont think this is an issue)....i can telnet and rlogin from one to the other....if i FTP from on et othe other and try to execute :
cd /user return
/user : no such file or... (1 Reply)
Hi,
I'm looking for someone who can think in sed. Basically, I need the trailing characters on every line in a file to be deleted. These characters are all in capitals, and always follow a number, but they often vary in number
For instance, on the line:
2006_10_9_p20_TALK
I'd want to... (4 Replies)
Hi All,
I am writing some data's into a file from C++ program. The files which i am writing is of fixed length . say 232 in length per line.
I am writing as . my c code is as
... (0 Replies)
Hi
I had deleted important files from my company server :(
the server is HPUX
and i don't know how to undo rm command or how to restore the files ..
iam appreciate for any help
Thanx ... (5 Replies)
Gurus,
I have one file which is having multiple columns and also this file is not always contain the exact columns; sometimes it contains 5 columns or 12 columns. Now, I need to find the difference from that particular file. Here is the sample file:
param1 | 10 | 20 | 30 |
param2 | 10 |... (6 Replies)
Hi Experts,
My requirement is to compare the second field/column in two files, if the second column is same in both the files then compare the first field. If the first is not matching then print the first and second fields of both the files.
first file (a .txt)
< 1210018971FF0000,... (6 Replies)
Hello,
I am PhD student (Biomedical sciences) and very new to Linux. I need some help with the following task :
I have files in the following format for their names :
An_A1_nnn_R1.txt; An_A1_nnm_R1.txt; An_A1_nnoo_R1.txt
An_A2_nnn_R1.txt; An_A2_nnm_R1.txt; An_A2_nno_R1.txt
... (8 Replies)
Hi,
I want to compare two files and print out their differences
e.g:
t1.txt
a,b,c,d
t2.txt
a,b,c,d,e,f
Output
e,f
Currently I do this long about way
tr ',' '\n' <t1.txt >t1.tmp
tr ',' '\n' <t2.txt >t2.tmp
diff t1.tmp t2.tmp > t12.tmp
I have to this comparison for 100 files, so... (3 Replies)
I have two file as given below which shows the ACL permissions of each file. I need to compare the source file with target file and list down the difference as specified below in required output. Can someone help me on this ?
Source File
*************
# file: /local/test_1
# owner: own
#... (4 Replies)
Discussion started by: sarathy_a35
4 Replies
LEARN ABOUT DEBIAN
bio::featureio::gtf
Bio::FeatureIO::gtf(3pm) User Contributed Perl Documentation Bio::FeatureIO::gtf(3pm)NAME
Bio::FeatureIO::gtf - read write features in GTF format
SYNOPSIS
Bio::FeatureIO::gff
DESCRIPTION
GTF, is also known as GFF v2.5. This class is simply a subclass of Bio::FeatureIO::gff that initializes with -version => 2.5.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Allen Day
Email allenday@ucla.edu
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
perl v5.14.2 2012-03-02 Bio::FeatureIO::gtf(3pm)