Extract lines with unique value using a specific column
Hi there,
I need a help with extracting data from tab delimited file which look like this
Code:
#CHROM POS ID REF ALT Human Cow Dog Mouse Lizard
chr2 3033 . G C 0/0 0/0 0/0 1/1 0/0
chr3 35040 . G T 0/0 0/0 ./. 1/1 0/1
chr4 60584 . T G 1/1 1/1 0/1 1/1 0/0
chr10 7147815 . G A 0/0 1/1 0/0 0/0 ./.
I am only interested to what is unique to the mouse when compared the other species (the actual file have more species).
The desired output
Code:
#CHROM POS ID REF ALT Human Cow Dog Mouse Lizard
chr2 3033 . G C 0/0 0/0 0/0 1/1 0/0
chr3 35040 . G T 0/0 0/0 ./. 1/1 0/1
Hi All,
Below is the sample data of my files:
O|A|571000689|D|S|PNH|S|SI
sadm|ibscml1x|
I|A|571000689|P|S|PNH|S|SI
sadm|ibscml1x|
O|A|571000689|V|S|PNH|S|SI
sadm|ibscml1x|
S|C|CAM|D|S|PNH|R|ZOA|2004
bscml1x| ... (3 Replies)
Hi all
I have a file which looks like this
1234|1|Jon|some text|some text
1234|2|Jon|some text|some text
3453|5|Jon|some text|some text
6533|2|Kate|some text|some text
4567|3|Chris|some text|some text
4567|4|Maggie|some text|some text
8764|6|Maggie|some text|some text
My third column is my... (9 Replies)
Dear all,
Greetings.
I would like to ask for your help to extract lines with specific words in addition 2 lines before and after these lines by using awk or sed.
For example, the input file is:
1 ak1 abc1.0
1 ak2 abc1.0
1 ak3 abc1.0
1 ak4 abc1.0
1 ak5 abc1.1
1 ak6 abc1.1
1 ak7... (7 Replies)
Is it possible to modify file like this.
1. Remove all the duplicate names in a define column i.e 4th col
2. Count the no.of unique names separated by ";" and print as a 5th col
thanx in advance!!
Q
input
c1 30 3 Eh2
c10 96 3 Frp
c41 396 3 Ua5;Lop;Kol;Kol
c62 2 30 Fmp;Fmp;Fmp
... (5 Replies)
Hello friends,
I have a text file with many columns (no. columns vary from row to row) separated by space. I need to collect all the values from 18th column to the end from each line and group them as pairs and then numbering like below..
1. 18th-col-value 19th-col-value 2. 20th-col-value ... (5 Replies)
Hi, I have tab-deliminated data similar to the following:
dot is-big 2
dot is-round 3
dot is-gray 4
cat is-big 3
hot in-summer 5
I want to count the frequency of each individual "unique" value in the 1st column. Thus, the desired output would be as follows:
dot 3
cat 1
hot 1
is... (5 Replies)
Data file example
I look for primary and * to isolate the interesting slot number.
slot=`sed '/^primary$/,/\*/!d' filename | tail -1 | sed s'/*//' | awk '{print $1" "$2}'`
Now I want to get the Touch line for only the associate slot number, in this case, because the asterisk... (2 Replies)
I would like to merge two tables based on column 1:
File 1:
1 today
1 green
2 tomorrow
3 red
File 2:
1 a lot
1 sometimes
2 at work
2 at home
2 sometimes
3 new
4 a lot
5 sometimes
6 at work (4 Replies)
Hi,
I have multiple files that each contain four columns of strings:
File1:
Code:
123 abc gfh 273
456 ddff jfh 837
789 ghi u4u 395
File2:
Code:
123 abc dd fu
456 def 457 nd
891 384 djh 783
I want to compare the strings in Column 1 of File 1 with each other file and Print in... (3 Replies)
Discussion started by: owwow14
3 Replies
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sdl::gfx::imagefilter
pods::SDL::GFX::ImageFilter(3pm) User Contributed Perl Documentation pods::SDL::GFX::ImageFilter(3pm)NAME
SDL::GFX::ImageFilter - image filtering functions
CATEGORY
TODO, GFX
METHODS
MMX_detect
int gfx_image_MMX_detect() CODE: SDL_imageFilterMMXdetect();
MMX_off
void gfx_image_MMX_off() CODE: SDL_imageFilterMMXoff();
MMX_on
void gfx_image_MMX_on() CODE: SDL_imageFilterMMXon();
add
int gfx_image_add(Src1, Src2, Dest, length) unsigned char *Src1 unsigned char *Src2 unsigned char *Dest int length
CODE: RETVAL = SDL_imageFilterAdd(Src1, Src2, Dest, length); OUTPUT: RETVAL
mean
int gfx_image_mean(Src1, Src2, Dest, length) unsigned char *Src1 unsigned char *Src2 unsigned char *Dest int length
CODE: RETVAL = SDL_imageFilterMean(Src1, Src2, Dest, length); OUTPUT: RETVAL
sub
int gfx_image_sub(Src1, Src2, Dest, length) unsigned char *Src1 unsigned char *Src2 unsigned char *Dest int length
CODE: RETVAL = SDL_imageFilterSub(Src1, Src2, Dest, length); OUTPUT: RETVAL
abs_diff
int gfx_image_abs_diff(Src1, Src2, Dest, length) unsigned char *Src1 unsigned char *Src2 unsigned char *Dest int length
CODE: RETVAL = SDL_imageFilterAbsDiff(Src1, Src2, Dest, length); OUTPUT: RETVAL
mult
int gfx_image_mult(Src1, Src2, Dest, length) unsigned char *Src1 unsigned char *Src2 unsigned char *Dest int length
CODE: RETVAL = SDL_imageFilterMult(Src1, Src2, Dest, length); OUTPUT: RETVAL
mult_nor
int gfx_image_mult_nor(Src1, Src2, Dest, length) unsigned char *Src1 unsigned char *Src2 unsigned char *Dest int length
CODE: RETVAL = SDL_imageFilterMultNor(Src1, Src2, Dest, length); OUTPUT: RETVAL
mult_div_by_2
int gfx_image_mult_div_by_2(Src1, Src2, Dest, length) unsigned char *Src1 unsigned char *Src2 unsigned char *Dest int
length CODE: RETVAL = SDL_imageFilterMultDivby2(Src1, Src2, Dest, length); OUTPUT: RETVAL
mult_div_by_4
int gfx_image_mult_div_by_4(Src1, Src2, Dest, length) unsigned char *Src1 unsigned char *Src2 unsigned char *Dest int
length CODE: RETVAL = SDL_imageFilterMultDivby4(Src1, Src2, Dest, length); OUTPUT: RETVAL
bit_and
int gfx_image_bit_and(Src1, Src2, Dest, length) unsigned char *Src1 unsigned char *Src2 unsigned char *Dest int length
CODE: RETVAL = SDL_imageFilterBitAnd(Src1, Src2, Dest, length); OUTPUT: RETVAL
bit_or
int gfx_image_bit_or(Src1, Src2, Dest, length) unsigned char *Src1 unsigned char *Src2 unsigned char *Dest int length
CODE: RETVAL = SDL_imageFilterBitOr(Src1, Src2, Dest, length); OUTPUT: RETVAL
div
int gfx_image_div(Src1, Src2, Dest, length) unsigned char *Src1 unsigned char *Src2 unsigned char *Dest int length
CODE: RETVAL = SDL_imageFilterDiv(Src1, Src2, Dest, length); OUTPUT: RETVAL
bit_negation
int gfx_image_bit_negation(Src1, Dest, length) unsigned char *Src1 unsigned char *Dest int length CODE:
RETVAL = SDL_imageFilterBitNegation(Src1, Dest, length); OUTPUT: RETVAL
add_byte
int gfx_image_add_byte(Src1, Dest, length, C) unsigned char *Src1 unsigned char *Dest int length unsigned char C
CODE: RETVAL = SDL_imageFilterAddByte(Src1, Dest, length, C); OUTPUT: RETVAL
add_uint
int gfx_image_add_uint(Src1, Dest, length, C) unsigned char *Src1 unsigned char *Dest int length unsigned int C
CODE: RETVAL = SDL_imageFilterAddUint(Src1, Dest, length, C); OUTPUT: RETVAL
add_byte_to_half
int gfx_image_add_byte_to_half(Src1, Dest, length, C) unsigned char *Src1 unsigned char *Dest int length unsigned char
C CODE: RETVAL = SDL_imageFilterAddByteToHalf(Src1, Dest, length, C); OUTPUT: RETVAL
sub_byte
int gfx_image_sub_byte(Src1, Dest, length, C) unsigned char *Src1 unsigned char *Dest int length unsigned char C
CODE: RETVAL = SDL_imageFilterSubByte(Src1, Dest, length, C); OUTPUT: RETVAL
sub_uint
int gfx_image_sub_uint(Src1, Dest, length, C) unsigned char *Src1 unsigned char *Dest int length unsigned int C
CODE: RETVAL = SDL_imageFilterSubUint(Src1, Dest, length, C); OUTPUT: RETVAL
shift_right
int gfx_image_shift_right(Src1, Dest, length, N) unsigned char *Src1 unsigned char *Dest int length unsigned char N
CODE: RETVAL = SDL_imageFilterShiftRight(Src1, Dest, length, N); OUTPUT: RETVAL
shift_right_uint
int gfx_image_shift_right_uint(Src1, Dest, length, N) unsigned char *Src1 unsigned char *Dest int length unsigned char
N CODE: RETVAL = SDL_imageFilterShiftRightUint(Src1, Dest, length, N); OUTPUT: RETVAL
mult_by_byte
int gfx_image_mult_by_byte(Src1, Dest, length, C) unsigned char *Src1 unsigned char *Dest int length unsigned char C
CODE: RETVAL = SDL_imageFilterMultByByte(Src1, Dest, length, C); OUTPUT: RETVAL
shift_right_and_mult_by_byte
int gfx_image_shift_right_and_mult_by_byte(Src1, Dest, length, N, C) unsigned char *Src1 unsigned char *Dest int length
unsigned char N unsigned char C CODE: RETVAL = SDL_imageFilterShiftRightAndMultByByte(Src1, Dest, length, N, C);
OUTPUT: RETVAL
shift_left_byte
int gfx_image_shift_left_byte(Src1, Dest, length, N) unsigned char *Src1 unsigned char *Dest int length unsigned char N
CODE: RETVAL = SDL_imageFilterShiftLeftByte(Src1, Dest, length, N); OUTPUT: RETVAL
shift_left_uint
int gfx_image_shift_left_uint(Src1, Dest, length, N) unsigned char *Src1 unsigned char *Dest int length unsigned char N
CODE: RETVAL = SDL_imageFilterShiftLeftUint(Src1, Dest, length, N); OUTPUT: RETVAL
shift_left
int gfx_image_shift_left(Src1, Dest, length, N) unsigned char *Src1 unsigned char *Dest int length unsigned char N
CODE: RETVAL = SDL_imageFilterShiftLeft(Src1, Dest, length, N); OUTPUT: RETVAL
binarize_using_threshold
int gfx_image_binarize_using_threshold(Src1, Dest, length, T) unsigned char *Src1 unsigned char *Dest int length
unsigned char T CODE: RETVAL = SDL_imageFilterBinarizeUsingThreshold(Src1, Dest, length, T); OUTPUT:
RETVAL
clip_to_range
int gfx_image_clip_to_range(Src1, Dest, length, Tmin, Tmax) unsigned char *Src1 unsigned char *Dest int length unsigned
char Tmin unsigned char Tmax CODE: RETVAL = SDL_imageFilterClipToRange(Src1, Dest, length, Tmin, Tmax); OUTPUT:
RETVAL
normalize_linear
int gfx_image_normalize_linear(Src1, Dest, length, Cmin, Cmax, Nmin, Nmax) unsigned char *Src1 unsigned char *Dest int
length int Cmin int Cmax int Nmin int Nmax CODE: RETVAL = SDL_imageFilterNormalizeLinear(Src1, Dest,
length, Cmin, Cmax, Nmin, Nmax); OUTPUT: RETVAL
convolve_kernel_3x3_divide
int gfx_image_convolve_kernel_3x3_divide(Src, Dest, rows, columns, Kernel, Divisor) unsigned char *Src unsigned char *Dest
int rows int columns Sint16 *Kernel unsigned char Divisor CODE: RETVAL =
SDL_imageFilterConvolveKernel3x3Divide(Src, Dest, rows, columns, Kernel, Divisor); OUTPUT: RETVAL
convolve_kernel_5x5_divide
int gfx_image_convolve_kernel_5x5_divide(Src, Dest, rows, columns, Kernel, Divisor) unsigned char *Src unsigned char *Dest
int rows int columns Sint16 *Kernel unsigned char Divisor CODE: RETVAL =
SDL_imageFilterConvolveKernel5x5Divide(Src, Dest, rows, columns, Kernel, Divisor); OUTPUT: RETVAL
convolve_kernel_7x7_divide
int gfx_image_convolve_kernel_7x7_divide(Src, Dest, rows, columns, Kernel, Divisor) unsigned char *Src unsigned char *Dest
int rows int columns Sint16 *Kernel unsigned char Divisor CODE: RETVAL =
SDL_imageFilterConvolveKernel7x7Divide(Src, Dest, rows, columns, Kernel, Divisor); OUTPUT: RETVAL
convolve_kernel_9x9_divide
int gfx_image_convolve_kernel_9x9_divide(Src, Dest, rows, columns, Kernel, Divisor) unsigned char *Src unsigned char *Dest
int rows int columns Sint16 *Kernel unsigned char Divisor CODE: RETVAL =
SDL_imageFilterConvolveKernel9x9Divide(Src, Dest, rows, columns, Kernel, Divisor); OUTPUT: RETVAL
convolve_kernel_3x3_shift_right
int gfx_image_convolve_kernel_3x3_shift_right(Src, Dest, rows, columns, Kernel, NRightShift) unsigned char *Src unsigned char
*Dest int rows int columns Sint16 *Kernel unsigned char NRightShift CODE: RETVAL =
SDL_imageFilterConvolveKernel3x3ShiftRight(Src, Dest, rows, columns, Kernel, NRightShift); OUTPUT: RETVAL
convolve_kernel_5x5_shift_right
int gfx_image_convolve_kernel_5x5_shift_right(Src, Dest, rows, columns, Kernel, NRightShift) unsigned char *Src unsigned char
*Dest int rows int columns Sint16 *Kernel unsigned char NRightShift CODE: RETVAL =
SDL_imageFilterConvolveKernel5x5ShiftRight(Src, Dest, rows, columns, Kernel, NRightShift); OUTPUT: RETVAL
convolve_kernel_7x7_shift_right
int gfx_image_convolve_kernel_7x7_shift_right(Src, Dest, rows, columns, Kernel, NRightShift) unsigned char *Src unsigned char
*Dest int rows int columns Sint16 *Kernel unsigned char NRightShift CODE: RETVAL =
SDL_imageFilterConvolveKernel7x7ShiftRight(Src, Dest, rows, columns, Kernel, NRightShift); OUTPUT: RETVAL
convolve_kernel_9x9_shift_right
int gfx_image_convolve_kernel_9x9_shift_right(Src, Dest, rows, columns, Kernel, NRightShift) unsigned char *Src unsigned char
*Dest int rows int columns Sint16 *Kernel unsigned char NRightShift CODE: RETVAL =
SDL_imageFilterConvolveKernel9x9ShiftRight(Src, Dest, rows, columns, Kernel, NRightShift); OUTPUT: RETVAL
sobel_x
int gfx_image_sobel_x(Src, Dest, rows, columns) unsigned char *Src unsigned char *Dest int rows int columns CODE:
RETVAL = SDL_imageFilterSobelX(Src, Dest, rows, columns); OUTPUT: RETVAL
sobel_x_shift_right
int gfx_image_sobel_x_shift_right(Src, Dest, rows, columns, NRightShift) unsigned char *Src unsigned char *Dest int rows
int columns unsigned char NRightShift CODE: RETVAL = SDL_imageFilterSobelXShiftRight(Src, Dest, rows, columns,
NRightShift); OUTPUT: RETVAL
align_stack
void gfx_image_align_stack() CODE: SDL_imageFilterAlignStack();
restore_stack
void gfx_image_restore_stack() CODE: SDL_imageFilterRestoreStack();
AUTHORS
See "AUTHORS" in SDL.
perl v5.14.2 2012-05-28 pods::SDL::GFX::ImageFilter(3pm)
10-06-2013
Extract lines with unique value using a specific column
