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Question regarding Bash program
Post 302860483 by biochemist on Sunday 6th of October 2013 12:29:56 PM
10-06-2013
Thanks sea,
Sorry to disturb you so much.
"out_Frog-mol-ryan_ligand_*.pdbq" is not getting translated in the log.pml file so the visualizer is not able to understand the "*" explicitly.
Let me explain the structure of directories. I have 100 folders named "Frog-mol-ryan_1, Frog-mol-ryan_2, Frog-mol-ryan_3 ... and so on till out_Frog-ryan-mol_ligand_100. Now each folder has 20 output files named "out_Frog-ryan-mol_ligand_1.pdbqt, out_Frog-ryan-mol_ligand_2.pdbqt .... and so on till out_Frog-ryan-mol_ligand_20.pdbqt". What I am trying to do is to make a bash script file which will go inside each folder (Frog-ryan-mol_1), grab all the "out_*.pdbqt" files and write a log.pml file with instructions to load all the molecules in the PyMol. Now after loading the molecules in PyMol, when I close the PyMol window the script will go to the next folder (Frog-ryan-mol_2) and do the same thing as the previous one.
Thank you so much for your time and patience
Sorry to disturb you so much.
"out_Frog-mol-ryan_ligand_*.pdbq" is not getting translated in the log.pml file so the visualizer is not able to understand the "*" explicitly.
Let me explain the structure of directories. I have 100 folders named "Frog-mol-ryan_1, Frog-mol-ryan_2, Frog-mol-ryan_3 ... and so on till out_Frog-ryan-mol_ligand_100. Now each folder has 20 output files named "out_Frog-ryan-mol_ligand_1.pdbqt, out_Frog-ryan-mol_ligand_2.pdbqt .... and so on till out_Frog-ryan-mol_ligand_20.pdbqt". What I am trying to do is to make a bash script file which will go inside each folder (Frog-ryan-mol_1), grab all the "out_*.pdbqt" files and write a log.pml file with instructions to load all the molecules in the PyMol. Now after loading the molecules in PyMol, when I close the PyMol window the script will go to the next folder (Frog-ryan-mol_2) and do the same thing as the previous one.
Thank you so much for your time and patience
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