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10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Dear friends
I am new to linux and was trying to split some files userwise in our linux server.
I have a data file of 156 continuous columns named ecscr final.
I want the script to redirect all the lines containing a pattern of 7 digits to separate files. I was using grep to do that,... (2 Replies)
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2. Shell Programming and Scripting
Hi,
I have a log file which contains lines like below:
2010-07-19 07:13:19,021 ERROR system ...(text)
2010-07-19 07:22:03,427 ERROR system ...(text)
class com... (text)
2010-07-19 07:23:19,026 ERROR system ...(text)
class com... (text)
each line is a separate line... I am given the a... (14 Replies)
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3. Shell Programming and Scripting
Hi All,
I have the below file data.txt.Using awk i want to grep all the zone data.Form the below command i can extact data upto of zone i give but i want it should print until next pattern.
awk '/^Total Collection /{c=5;next}c-->0' zin45srs08.tools_utilization
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Discussion started by: ajaincv
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4. UNIX for Dummies Questions & Answers
Hi All,
I am trying to find numbers with balance greater than 1 and less than equal 2 from the below file using awk
Input file
num ,bal
100199,1.708
100225,0
100226,0
100228,0.771166
100232,2
output file
100199,1.708
100232,2
I am using the following command for this... (2 Replies)
Discussion started by: pistachio
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5. Shell Programming and Scripting
Hello Guyz
I have been following this forum for a while and the solutions provided are super useful. I currently have a scenario where i need to search for a pattern and start searching by keeping the first pattern as a baseline
ABC
DEF
LMN
EFG
HIJ
LMN
OPQ
In the above text i need to... (8 Replies)
Discussion started by: RickCharles
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6. Shell Programming and Scripting
Hi,
I have a file with multiple lines(fixed width dat file). I want to search for '02' in the positions 45-46 and if available, in that lines, I need to replace value in position 359 with blank. As I am new to unix, I am not able to figure out how to do this. Can you please help me to achieve... (9 Replies)
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7. Post Here to Contact Site Administrators and Moderators
In file, we have millions of records each of 1000 in length. And at specific position say 800 there is a space, we need to replace it with Character X if the ID in that row starts with 123.
So far i have used the below which is replacing space at that position to X but its not checking for... (3 Replies)
Discussion started by: Jagmeet Singh
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8. Shell Programming and Scripting
Input data as below (filetest.txt):
1|22 JAN Minimum Bal 20.00 | SAT
2|09 FEB Extract bal 168.00BR | REM
3|MIN BAL | LEX
Output should be:
( If there is Date & Month in 2nd field of Input file, It should be seperated else blank. If There is Decimal OR Decimal & Currency in last of the 2nd... (7 Replies)
Discussion started by: JSKOBS
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9. UNIX for Beginners Questions & Answers
I have this fileA
TEST FILE ABC
this file contains ABC;
TEST FILE DGHT this file contains DGHT;
TEST FILE 123
this file contains ABC,
this file contains DEF,
this file contains XYZ,
this file contains KLM
;
I want to have a fileZ that has only (begin search pattern for will be... (2 Replies)
Discussion started by: vbabz
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10. Shell Programming and Scripting
Hello,
We have wrote shell script for multiple file name search pattern.
file format: <numner>_<20180809>.txt
starting with single number and ending with 8 digits number
Command:
awk -v string="12_1234" -v serch="^+_+$" "BEGIN{ if (string ~/serch$/) print string }"
If sting matches... (4 Replies)
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LEARN ABOUT DEBIAN
cd-hit-para
CD-HIT-PARA.PL(1) User Commands CD-HIT-PARA.PL(1)
NAME
cd-hit-para.pl - divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs
SYNOPSIS
cd-hit-para.pl options
DESCRIPTION
This script divide a big clustering job into pieces and submit jobs to remote computers over a network to make it parallel. After
all the jobs finished, the script merge the clustering results as if you just run a single cd-hit or cd-hit-est.
You can also use it to divide big jobs on a single computer if your computer does not have enough RAM (with -L option).
Requirements:
1 When run this script over a network, the directory where you
run the scripts and the input files must be available on all the remote hosts with identical path.
2 If you choose "ssh" to submit jobs, you have to have
passwordless ssh to any remote host, see ssh manual to know how to set up passwordless ssh.
3 I suggest to use queuing system instead of ssh,
I currently support PBS and SGE
4 cd-hit cd-hit-2d cd-hit-est cd-hit-est-2d
cd-hit-div cd-hit-div.pl must be in same directory where this script is in.
Options
-i input filename in fasta format, required
-o output filename, required
--P program, "cd-hit" or "cd-hit-est", default "cd-hit"
--B filename of list of hosts,
requred unless -Q or -L option is supplied
--L number of cpus on local computer, default 0
when you are not running it over a cluster, you can use this option to divide a big clustering jobs into small pieces, I suggest you
just use "--L 1" unless you have enough RAM for each cpu
--S Number of segments to split input DB into, default 64
--Q number of jobs to submit to queue queuing system, default 0
by default, the program use ssh mode to submit remote jobs
--T type of queuing system, "PBS", "SGE" are supported, default PBS
--R restart file, used after a crash of run
-h print this help
More cd-hit/cd-hit-est options can be speicified in command line
Questions, bugs, contact Weizhong Li at liwz@sdsc.edu
cd-hit-para.pl 4.6-2012-04-25 April 2012 CD-HIT-PARA.PL(1)