Hi all,
Does anybody know or guide me on how to remove the first N bytes and the last N bytes from a binary file? Is there any AWK or SED or any command that I can use to achieve this?
Your help is greatly appreciated!!
Best Regards,
Naveen. (1 Reply)
Hello,
I have come across the necessity for me to deal with binary sequences and I had a few questions.
1- Does any UNIX scripting language provide any tool or command for converting text data to binary sequences? Example of binary sequence: "0x97 0x93 0x85 0x40 0xd5 0xd6 0xd7"
2- If I want... (2 Replies)
Hi,
I have an one-line file consisting of a sequence of 660 letters. I would like to extract 9-letter blocks iteratively:
ASDFGHJKLQWERTYUIOPZXCVBNM
first block: ASDFGHJKL
1nd block: SDFGHJKLQ
What I have so far only gives me the first block, can anyone please explain why?
cat... (7 Replies)
Hi,
This is part of a large text file I need to separate out.
I'd like some help to build a shell script that will extract the text between sets of dashed lines, write that to a new file using the whole or part of the first text string as the new file name, then move on to the next one and... (7 Replies)
The title is clear: why does ext3 allocate 8 blocks for files that are few bytes long?
If I create a file named "test", put a few chars in it, and then I run:
stat test
I get that "Blocks: 8"
I searched in the web and found that ext does that, it allocates 8 blocks even if It doesn't need... (4 Replies)
Hello guys. I really hope someone will help me with this one..
So, I have to write this script who:
- creates a file home/student/vmdisk of 10 mb
- formats that file to ext3
- mounts that partition to /mnt/partition
- creates a file /mnt/partition/data. In this file, there will... (1 Reply)
Hi,
I have a file with more than 28000 records and it looks like below..
>mm10_refflat_ABCD range=chr1:1234567-2345678
tgtgcacactacacatgactagtacatgactagac....so on
>mm10_refflat_BCD range=chr1:3234567-4545678...
tgtgcacactacacatgactagtatgtgcacactacacatgactagta
.
.
.
.
.
so on
... (2 Replies)
I have a fastq file from small RNA sequencing with sequence lengths between 15 - 30. I wanted to filter sequence lengths between 21-25 and write to another fastq file. how can i do that? (4 Replies)
I have a text file, input.fasta contains some protein sequences. input.fasta is shown below.
>P02649
MKVLWAALLVTFLAGCQAKVEQAVETEPEPELRQQTEWQSGQRWELALGRFWDYLRWVQT
LSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQA
RLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVY... (8 Replies)
I sat down yesterday to write this script and have just realised that my methodology is broken........
In essense I have.....
----------------------------------------------------------------- (This line really is in the file)
Service ID: 12345 ... (7 Replies)
Discussion started by: Bashingaway
7 Replies
LEARN ABOUT REDHAT
fseek
FSEEK(3) Linux Programmer's Manual FSEEK(3)NAME
fgetpos, fseek, fsetpos, ftell, rewind - reposition a stream
SYNOPSIS
#include <stdio.h>
int fseek(FILE *stream, long offset, int whence);
long ftell(FILE *stream);
void rewind(FILE *stream);
int fgetpos(FILE *stream, fpos_t *pos);
int fsetpos(FILE *stream, fpos_t *pos);
DESCRIPTION
The fseek function sets the file position indicator for the stream pointed to by stream. The new position, measured in bytes, is obtained
by adding offset bytes to the position specified by whence. If whence is set to SEEK_SET, SEEK_CUR, or SEEK_END, the offset is relative to
the start of the file, the current position indicator, or end-of-file, respectively. A successful call to the fseek function clears the
end-of-file indicator for the stream and undoes any effects of the ungetc(3) function on the same stream.
The ftell function obtains the current value of the file position indicator for the stream pointed to by stream.
The rewind function sets the file position indicator for the stream pointed to by stream to the beginning of the file. It is equivalent
to:
(void)fseek(stream, 0L, SEEK_SET)
except that the error indicator for the stream is also cleared (see clearerr(3)).
The fgetpos and fsetpos functions are alternate interfaces equivalent to ftell and fseek (with whence set to SEEK_SET), setting and storing
the current value of the file offset into or from the object referenced by pos. On some non-UNIX systems an fpos_t object may be a complex
object and these routines may be the only way to portably reposition a text stream.
RETURN VALUE
The rewind function returns no value. Upon successful completion, fgetpos, fseek, fsetpos return 0, and ftell returns the current offset.
Otherwise, -1 is returned and the global variable errno is set to indicate the error.
ERRORS
EBADF The stream specified is not a seekable stream.
EINVAL The whence argument to fseek was not SEEK_SET, SEEK_END, or SEEK_CUR.
The function fgetpos, fseek, fsetpos, and ftell may also fail and set errno for any of the errors specified for the routines fflush(3),
fstat(2), lseek(2), and malloc(3).
CONFORMING TO
The fgetpos, fsetpos, fseek, ftell, and rewind functions conform to ANSI X3.159-1989 (``ANSI C'').
SEE ALSO lseek(2), fseeko(3)BSD MANPAGE 1993-11-29 FSEEK(3)