Here's a challenge for you wizards...
I have a file formatted as follows;
$
What I need to output is;
87654321 Bobby One
12345678 Bobby One
09876543 Bobby One
1107338 Bobby! Two
Any Ideas how I can do this? I've tried sed but I'm not sure if perl might be a better way to... (2 Replies)
hi , i would like to parse some file with the fallowing data :
data data data "unwanted data" data data "unwanted data"
data data data data #unwanted data.
what i want it to have any coments between "" and after # to be erased using awk or/and sed.
has anyone an idea?
thanks. (3 Replies)
Hi people!,
I need extract from the file (test-file.txt) the values between
<context> and </context> tag's , the total are 7 lines,but i can only get 5 or 2 lines!!:confused:
Please look my code:
#awk '/context/{flag=1} /\/context/{flag=0} !/context/{ if (flag==1) p
rint $0; }'... (3 Replies)
Hi All,
I have a log file like this
E Mon Oct 06 00:17:08 2008 xxx2 cm:10614 fm_pi2_svc_iptv_purchase.c:149 1:pin_deferred_act:10601:11:169:1223245028:16
pi2_op_svc_iptv_purchase error
<location=PIN_ERRLOC_FM:5 class=PIN_ERRCLASS_SYSTEM_DETERMINATE:1... (10 Replies)
Hi Guys,
I need help with processing data in a file, line by line.
My file test.txt has
X_Building_X5946/X0 BUT/U_msp/RdBuMon_d2_B_00 BUT/U_msp/FfRmDaMix_d2_Pi3 Test_Long xp=849.416 yp=245.82 xn=849.488 yn=245.82 w=0.476 l=0.072 fault_layer="Al_T01_Mod" $ $X=849416 $Y=245582... (2 Replies)
I want to delete corrupt records from a file through awk or sed.
Can anyone help me with this
Thanks
Striker
Change subject to a descriptive one, ty. (1 Reply)
Hi,
I'm working on getting more acquainted with VMWare and the SUSE SLES OS, so I've downloaded and created a guest running SLES 11 SP1. This works great, no problems. However, there's some funny-ness (is that a word?) when I'm attempting/testing to SSH from outside my local LAN into the guest.... (3 Replies)
I don't necessary have a problem, as I have a solution. It is just that there may be a better solution.
GOAL: Part one: Parse data from a file using the "\" as a delimiter and extracting only the last delimiter. Part two: Parse same file and extract everything but the last delimited item.
... (8 Replies)
I'm new to shell programming, but I think I learn best by following an example. I'm trying to cook up an awk/sed script, but I obviously lack the required syntax skills to achieve it. The output that I get from running my ksh script looks like this:
I need to search each numbered line for... (10 Replies)
Discussion started by: iskatel
10 Replies
LEARN ABOUT DEBIAN
bio::treeio::svggraph
Bio::TreeIO::svggraph(3pm) User Contributed Perl Documentation Bio::TreeIO::svggraph(3pm)NAME
Bio::TreeIO::svggraph - A simple output format that converts a Tree object to an SVG output
SYNOPSIS
use Bio::TreeIO;
my $in = Bio::TreeIO->new(-file => 'input', -format => 'newick');
my $out = Bio::TreeIO->new(-file => '>output', -format => 'svggraph');
while( my $tree = $in->next_tree ) {
my $svg_xml = $out->write_tree($tree);
}
DESCRIPTION
This outputs a tree as an SVG graphic using the SVG::Graph API
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Brian OConnor
Email brian.oconnor-at-excite.com
CONTRIBUTORS
Allen Day Guillaume Rousse, Guillaume-dot-Rousse-at-inria-dot-fr
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::TreeIO::svggraph->new();
Function: Builds a new Bio::TreeIO::svggraph object
Returns : Bio::TreeIO::svggraph
Args :-width => image width (default 1600)
-height => image height (default 1000)
-margin => margin (default 30)
-stroke => stroke color (default 'black')
-stroke_width=> stroke width (default 2)
-font_size=> font size (default '10px')
-nomalize => undef or 'log' (default is undef)
write_tree
Title : write_tree
Usage : $treeio->write_tree($tree);
Function: Write a tree out to data stream in newick/phylip format
Returns : none
Args : Bio::Tree::TreeI object
decorateRoot
Title : _decorateRoot
Usage : internal methods
Function:
Example :
Returns :
Args :
next_tree
Title : next_tree
Usage :
Function: Sorry not possible with this format
Returns : none
Args : none
perl v5.14.2 2012-03-02 Bio::TreeIO::svggraph(3pm)