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Full Discussion: [Solved] Converting the data into matrix with 0's and 1's
Top Forums Shell Programming and Scripting [Solved] Converting the data into matrix with 0's and 1's Post 302844913 by raj_k on Tuesday 20th of August 2013 09:35:25 AM
Old 08-20-2013
[Solved] Converting the data into matrix with 0's and 1's
I have a file that contains 2 columns tag,pos
cat input_file

Code:
tag	pos
atg	10
ata	16
agt	15
agg	19
atg	17
agg	14

I have used following command to sort the file based on second column
Code:
sort -k 2 input_file
tag	pos 
atg	10
agg	14
agt	15
ata	16	
agg	19
atg	17

i want to convert it into a matrix as below with 5 as an interval and #1 and #0 representing the presence or absence of that tag within that interval

output_file

Code:
	atg	agg	agt	ata
10-15	1	1	1	0
15-20	1	1	0	1

The first row in the output matrix is 10-15 because in the sorted file it starts from 10
 

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gappletviewer

GAPPLETVIEWER(1)							GNU							  GAPPLETVIEWER(1)

NAME

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SYNOPSIS

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DESCRIPTION

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OPTIONS

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0.98								    2010-07-05							  GAPPLETVIEWER(1)
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