Login or Register to Ask a Question and Join Our Community

Sponsored Content
Full Discussion: [Solved] Converting the data into matrix with 0's and 1's
Top Forums Shell Programming and Scripting [Solved] Converting the data into matrix with 0's and 1's Post 302844913 by raj_k on Tuesday 20th of August 2013 09:35:25 AM
Old 08-20-2013
[Solved] Converting the data into matrix with 0's and 1's
I have a file that contains 2 columns tag,pos
cat input_file

Code:
tag	pos
atg	10
ata	16
agt	15
agg	19
atg	17
agg	14

I have used following command to sort the file based on second column
Code:
sort -k 2 input_file
tag	pos 
atg	10
agg	14
agt	15
ata	16	
agg	19
atg	17

i want to convert it into a matrix as below with 5 as an interval and #1 and #0 representing the presence or absence of that tag within that interval

output_file

Code:
	atg	agg	agt	ata
10-15	1	1	1	0
15-20	1	1	0	1

The first row in the output matrix is 10-15 because in the sorted file it starts from 10
 

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

converting a tabular format data to comma seperated data in KSH

Hi, Could anyone help me in changing a tabular format output to comma seperated file pls in K-sh. Its very urgent. E.g : username empid ------------------------ sri 123 to username,empid sri,123 Thanks, Hema:confused: (2 Replies)
Discussion started by: Hemamalini
2 Replies

2. Shell Programming and Scripting

extract data from a data matrix with filter criteria

Here is what old matrix look like, IDs X1 X2 Y1 Y2 10914061 -0.364613333 -0.362922333 0.001691 -0.450094667 10855062 0.845956333 0.860396667 0.014440333 1.483899333... (7 Replies)
Discussion started by: ssshen
7 Replies

3. Programming

Converting distance list to distance matrix in R

Hi power user, I have this type of data (distance list): file1 A B 10 B C 20 C D 50I want output like this # A B C D A 0 10 30 80 B 10 0 20 70 C 30 20 0 50 D 80 70 50 0 Which is a distance matrix I have tried... (0 Replies)
Discussion started by: anjas
0 Replies

4. Ubuntu

How to convert full data matrix to linearised left data matrix?

Hi all, Is there a way to convert full data matrix to linearised left data matrix? e.g full data matrix Bh1 Bh2 Bh3 Bh4 Bh5 Bh6 Bh7 Bh1 0 0.241058 0.236129 0.244397 0.237479 0.240767 0.245245 Bh2 0.241058 0 0.240594 0.241931 0.241975 ... (8 Replies)
Discussion started by: evoll
8 Replies

5. Shell Programming and Scripting

Converting variable space width data into CSV data in bash

Hi All, I was wondering how I can convert each line in an input file where fields are separated by variable width spaces into a CSV file. Below is the scenario what I am looking for. My Input data in inputfile.txt 19 15657 15685 Sr2dReader 107.88 105.51... (4 Replies)
Discussion started by: vharsha
4 Replies

6. Shell Programming and Scripting

Converting to matrix-like file using AWK

Hi, Needs for statistics, doing converting Here is a sample file Input : 1|A|17,94 1|B|22,59 1|C|56,93 2|A|63,71 2|C|23,92 5|B|19,49 5|C|67,58 expecting something like that Output : 1|A|17,94|B|22,59|C|56,93 2|A|63,71|B|0|C|23,92 5|A|0|B|19,49|C|67,58 (11 Replies)
Discussion started by: fastlane3000
11 Replies

7. Programming

Converting columns to matrix

Dear All I would like to convert columns to matrix For example my data looks like this D2 0 D2 0 1.0 D2 0 D2 1 0.308 D2 0 D2 2 0.554 D2 0 D2 3 0.287 D2 0 D2 4 0.633 D2 0 D2 5 0.341 D2 0 D2 6 0.665 D2 0 D2 7 0.698 D2 0 D2 8 0.625 D2 0 D2 9 0.429 D2 0 D2 10 0.698 D2 0 D2 11... (7 Replies)
Discussion started by: bala06
7 Replies

8. Shell Programming and Scripting

[SOLVED] Converting data from one format to the other

Hi All, I need to convert an exel spreadsheet into a SAS dataset, and the following format change is needed. Please help, this is too complex for a biologist. Let me describe the input. 1st row is generation.1st column in keyword 'generation', starting 2nd column there are 5... (9 Replies)
Discussion started by: newbie83
9 Replies

9. Shell Programming and Scripting

Converting text file in a matrix

Hi All, I do have a file with many lines (rows) and it is space delimited. For example: I have a file named SR345_pl.txt. If I open it in an editor, it looks like this: adfr A2 0.9345 dtgr/2 A2 0.876 fgh/3 A2 023.76 fghe/4 A2 2345 bnhy/1 A3 3456 bhy A3 0.9876 phy A5 0.987 kdrt A5... (9 Replies)
Discussion started by: Lucky Ali
9 Replies

10. UNIX for Dummies Questions & Answers

Converting unstructured data to structured data

Hi, Can someone help in converting the below unstructured data to a CSV format please. { "branchId" : "BNSFGDJNSJG-73264HB-132131BNHJFSDG", "branchName" : "NEWYORK-SSDF", "branchProductId" : "72Y5HFHSF7H3RUNAWEF", "PreferenceId" : "BASDBVcbzcYHcb", "emailId" :... (9 Replies)
Discussion started by: naveen.kuppili
9 Replies

LEARN ABOUT MOJAVE

locale::codes::langfam5.18

Locale::Codes::LangFam(3pm)				 Perl Programmers Reference Guide			       Locale::Codes::LangFam(3pm)

NAME

       Locale::Codes::LangFam - standard codes for language extension identification

SYNOPSIS

	  use Locale::Codes::LangFam;

	  $lext = code2langfam('apa');		       # $lext gets 'Apache languages'
	  $code = langfam2code('Apache languages');    # $code gets 'apa'

	  @codes   = all_langfam_codes();
	  @names   = all_langfam_names();

DESCRIPTION

       The "Locale::Codes::LangFam" module provides access to standard codes used for identifying language families, such as those as defined in
       ISO 639-5.

       Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default ISO 639-5
       language family codes will be used.

SUPPORTED CODE SETS

       There are several different code sets you can use for identifying language families. A code set may be specified using either a name, or a
       constant that is automatically exported by this module.

       For example, the two are equivalent:

	  $lext = code2langfam('apa','alpha');
	  $lext = code2langfam('apa',LOCALE_LANGFAM_ALPHA);

       The codesets currently supported are:

       alpha
	   This is the set of three-letter (lowercase) codes from ISO 639-5 such as 'apa' for Apache languages.

	   This is the default code set.

ROUTINES

       code2langfam ( CODE [,CODESET] )
       langfam2code ( NAME [,CODESET] )
       langfam_code2code ( CODE ,CODESET ,CODESET2 )
       all_langfam_codes ( [CODESET] )
       all_langfam_names ( [CODESET] )
       Locale::Codes::LangFam::rename_langfam  ( CODE ,NEW_NAME [,CODESET] )
       Locale::Codes::LangFam::add_langfam  ( CODE ,NAME [,CODESET] )
       Locale::Codes::LangFam::delete_langfam  ( CODE [,CODESET] )
       Locale::Codes::LangFam::add_langfam_alias  ( NAME ,NEW_NAME )
       Locale::Codes::LangFam::delete_langfam_alias  ( NAME )
       Locale::Codes::LangFam::rename_langfam_code  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Codes::LangFam::add_langfam_code_alias  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Codes::LangFam::delete_langfam_code_alias  ( CODE [,CODESET] )
	   These routines are all documented in the Locale::Codes::API man page.

SEE ALSO

       Locale::Codes
	   The Locale-Codes distribution.

       Locale::Codes::API
	   The list of functions supported by this module.

       http://www.loc.gov/standards/iso639-5/id.php
	   ISO 639-5 .

AUTHOR

       See Locale::Codes for full author history.

       Currently maintained by Sullivan Beck (sbeck@cpan.org).

COPYRIGHT

	  Copyright (c) 2011-2013 Sullivan Beck

       This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

perl v5.18.2							    2013-11-04					       Locale::Codes::LangFam(3pm)
All times are GMT -4. The time now is 07:40 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy