There are many isoforms so tissue field may not be identical even if they have same gene name. I want all (only if we consider gene names they appear to be duplicates but when we see other fields there would be some difference). synonyms are also needed sorry for not mentioning that earlier it would be better if it contains following fields
hi,
Apologies if this has been covered.
I have requirement where i have to convert a single column into multiple column.
My data will be like this -
2
3
4
5
6
Output required -
2 3 4 5 6 (1 Reply)
Hi Gurus,
How to convert rows in to columns using linux shell scripting
Input is like (sample.txt)
ABC
DEF
GHI
JKL
MNO
PQR
STU
VWX
YZA
BCD
output should be (sampleoutput.csv)
ABC,DEF,GHI,JKL,MNO
PQR,STU,VWX,YZA,BCD (2 Replies)
Hi I have a matrix with n rows and m columns like below example. i want to extract all the pairs with values <200.
Input
A B C D
A 100 206 51 300
B 206 100 72 48
C 351 22 100 198
D 13 989 150 100
Output format
A,A:200
A,C:51
B,B:100... (2 Replies)
I am looking to print the data in columns and after every 3 words it should be a new row.
cat example.out | awk 'END { for (i = 0; ++i < m;) print _;print _ }{ _ = _ x ? _ OFS $1 : $1}' m=1| grep -i INNER
I am looking to print in a new line after every 3 words.
... (2 Replies)
Hi Friends,
Hope all is well.
I have an input file like this
a gene1 10
b gene1 2
c gene2 20
c gene3 10
d gene4 5
e gene5 6
Steps to reach output.
1. Print unique values of column1 as column of the matrix, which will be
a
b
c (5 Replies)
hi folks,
I have a sample data like what is shown below:
1,ID=1000
1,Org=CedarparkHospital
1,cn=john
1,sn=doe
1,uid=User001
2,uid=User002
2,ID=2000
2,cn=steve
2,sn=jobs
2,Org=Providence
I would like to convert it into the below format:
1,1000,CedarparkHospital,john,doe,User001... (11 Replies)
Team,
I am having requirement to convert rows to columns
Input is:
key ,count, id1, pulse1, id2, pulse2 ,id3, pulse3
12, 2 , 14 , 56 , 15, 65
13, 3, 12, 32, 14, 23, 18, 54
22, 1 , 32, 42
Expected Out put:
key, id,pulse
12, 14, 56
12, 15, 65
13 ,12, 32
13, 14 ,23
13, 18 ,54
22 ,32,... (3 Replies)
Discussion started by: syam1406
3 Replies
LEARN ABOUT DEBIAN
go::model::association
GO::Model::Association(3pm) User Contributed Perl Documentation GO::Model::Association(3pm)NAME
GO::Model::Association - association between a GO term and a gene product
SYNOPSIS
# print all gene products associated with a GO::Model::Term
my $assoc_l = $term->association_list;
foreach my $assoc (@$assoc_l) {
printf "gene product:%s %s %s (evidence: %s)
",
$assoc->gene_product->symbol,
$assoc->is_not ? "IS NOT" : "IS",
$term->name,
map {$_->code} @{$assoc->evidence_list};
}
DESCRIPTION
Represents an association between a GO term (GO::Model::Term) and a gene product (GO::Model::GeneProduct)
go_public_acc
Usage -
Returns -
Args -
add_evidence
Usage - $assoc->add_evidence($my_evid);
Returns -
Args - GO::Model::Evidence
evidence_list
Usage - my $ev_l = $assoc->evidence_list;
Returns -
Args -
gets/sets arrayref of GO::Model::Evidence
evidence_as_str
Usage - print $assoc->evidence_as_str
Usage - print $assoc->evidence_as_str(1); #verbose
Returns -
Args - verbose
concatenates evcodes together, for display
has_evcode
Usage - if $assoc->has_evcode("IEA");
Returns - boolean
Args - evcode [string]
remove_evcode
Usage - $assoc->remove_evcode("IEA");
Returns -
Args - evcode [string]
removes all evidence of the specified type from the association; useful for filtering
evidence_score
Usage - my $score = $assoc->evidence_score
Returns - 0 <= float <= 1
Args -
returns a score for the association based on the evidence;
This is an EXPERIMENTAL method; it may be removed in future versions.
The evidence fields can be thought of in a loose hierachy:
TAS
IDA
IMP/IGI/IPI
ISS
NAS
see http://www.geneontology.org/GO.evidence.html
gene_product
Usage - my $gp = $assoc->gene_product
Returns -
Args -
gets sets GO::Model::GeneProduct
assigned_by
Usage -
Returns -
Args -
is_not
Usage -
Returns -
Args -
gets/sets boolean representing whether this relationship is negated
assocdate
Usage -
Returns -
Args -
assocdate
Usage -
Returns -
Args -
gets/sets integer representing the date of the association (YYYYMMDD format)
role_group
Usage -
Returns -
Args -
gets/sets integer to indicate which associations go together
perl v5.14.2 2013-02-07 GO::Model::Association(3pm)