Hi All,
I have files:
1. abc.sql
'This is a sample file for testing'
This does not have quotations
this also does not have quotations.
and this 'has quotations'.
here I need to list the hard coded strings 'This is a sample file for testing' and
'has quotations'.
So i have... (13 Replies)
Hi, how do I match a particular element in a list and replace it with blank?
awk 'sub///' $FILE
list="AL, AK, AZ, AR, CA, CO, CT, DE, FL, GA,
HI, ID, IL, IN, IA, KS, KY, LA, ME, MD,
MA, MI, MN, MS, MO, MT, NE, NV, NH, NJ,
NM, NY, NC, ND, OH, OK, OR, PA, RI, SC,
SD, TN, TX, UT, VT, VA, WA,... (2 Replies)
I have a text wich looks like this:
clid=2 cid=6 client_database_id=35 client_nickname=Peter client_type=0|clid=3 cid=22 client_database_id=57 client_nickname=Paul client_type=0|clid=5 cid=22 client_database_id=7 client_nickname=Mary client_type=0|clid=6 cid=22 client_database_id=6... (3 Replies)
Hi, i read couple of threads here on forum, and googled about what bugs me, yet i still can't find solution.
Problem is below.
I need to change this string (with sed if it is possible):
This is message text that is being quoted
to look like this:
This is message text that is being quotedI... (2 Replies)
If i wanted to search for two strings that are on lines in the log, how do I do it?
The following code searches for just one string that is one one line.
awk '/^/ {split($2,s,",");a=$1 FS s} /failure agaf@fafa/ {b=a} END{print b}' urfile
What if I wanted to search for "failure agaf@fafa"... (3 Replies)
Hi. I'm hoping that someone can help me with a bash script to delete a block of lines from a file.
What I want to do is delete every line between two stings that are the same,
including the line the first string is on but not the second.
(Marked lines to match with !)
For example if I... (2 Replies)
Hi,
I have a file with more than 50,000 lines of records and each record is 50 bytes in length.
I need to search every record in this file between positions 11-19 (9 bytes) and 32-40 (9 bytes) and in case any of the above 2 fields is alpha-numeric, i need to replace the whole 9 bytes of that... (7 Replies)
I have input file like
AAA
AAA
CCC
CCC
CCC
EEE
EEE
EEE
EEE
FFF
FFF
GGG
GGG
i was trying to retrieve data between two strings using sed.
sed -n /CCC/,/FFF/p input_file
Am getting output like
CCC
CCC
CCC (1 Reply)
trying to write up a script to put the suffix back.
heres what I have but can't get it to do anything :(
would like it to be name.date.suffix
rsync -zrlpoDtub --suffix=".`date +%Y%m%d%k%M%S`.~" --bwlimit=1024 /mymounts/test1/ /mymounts/test2/
while IFS=. read -r -u 9 -d '' name... (1 Reply)
Hello,
I would like to replace all occurencies of long data types by others (coresponding int) using 'sed' in the extensive source code of a software package written for 32 bit CPUs.
I must use regular expressions to avoid wrong replacements like
s/unsigned]+long/ulong/gLeaving out... (2 Replies)
Discussion started by: Mick P. F.
2 Replies
LEARN ABOUT DEBIAN
tigr-extract
TIGR-GLIMMER(1) General Commands Manual TIGR-GLIMMER(1)NAME
tigr-glimmer -- Fine start/stop positions of genes in genome sequence
SYNOPSIS
tigr-extract [genome-file options]
DESCRIPTION
Program extract takes a FASTA format sequence file and a file with a list of start/stop positions in that file (e.g., as produced by the
long-orfs program) and extracts and outputs the specified sequences.
The first command-line argument is the name of the sequence file, which must be in FASTA format.
The second command-line argument is the name of the coordinate file. It must contain a list of pairs of positions in the first file, one
per line. The format of each entry is:
<IDstring>> <start position> <stop position>
This file should contain no other information, so if you're using the output of glimmer or long-orfs , you'll have to cut off header
lines.
The output of the program goes to the standard output and has one line for each line in the coordinate file. Each line contains the
IDstring , followed by white space, followed by the substring of the sequence file specified by the coordinate pair. Specifically, the
substring starts at the first position of the pair and ends at the second position (inclusive). If the first position is bigger than the
second, then the DNA reverse complement of each position is generated. Start/stop pairs that "wrap around" the end of the genome are
allowed.
OPTIONS -skip makes the output omit the first 3 characters of each sequence, i.e., it skips over the start codon. This was the behaviour of
the previous version of the program.
-l makes the output omit an sequences shorter than n characters. n includes the 3 skipped characters if the -skip switch is
one.
SEE ALSO
tigr-glimmer3 (1), tigr-long-orfs (1), tigr-adjust (1), tigr-anomaly (1), tigr-build-icm (1), tigr-check (1), tigr-codon-usage (1), tigr-
compare-lists (1), tigr-extract (1), tigr-generate (1), tigr-get-len (1), tigr-get-putative (1),
http://www.tigr.org/software/glimmer/
Please see the readme in /usr/share/doc/tigr-glimmer for a description on how to use Glimmer3.
AUTHOR
This manual page was quickly copied from the glimmer web site by Steffen Moeller moeller@debian.org for the Debian system.
TIGR-GLIMMER(1)