Program to match the id and replace one letter in the content
Hi all,
I have one file with a sequence and the other file which says the position and the letter to be changed. I have to match two files and replace content. Example is shown which will describe what I want to do. For example, file 1 has many sequences and few are shown below
sequence file:
and the second file has the id which is enclosed in between || in the first file and the letters to be changed. Now I have to match the id column with the header line in the seuqence file |P78363|. if they are same, do the change as mentioned and write in the output file.
the output file should contain the sequences of the changed letters and the change name in the header as highlighted (bold) in the below code
Could anyone please help with a script which can do this. It will be bery helpful
Note: this is not a school exercise.
Hi,
Long list of Input file1 content:
1285_t
4860_i
4817_v
8288_c
9626_a
.
.
.
Long list of Input file2 content:
1285_t chris germany
8288_c steve england
9626_a dave swiss
9260_s stephanie denmark
.
.
. (14 Replies)
Hi,
im able to search for string in a file (ex: grep -w "$a" input.txt). but i have to search for the uppercase of a string in a file where upper case of the file content matches something like below.
where upper("$a")== converted to upper case string in (input.txt)
can someone please provide... (5 Replies)
Good afternoon all,
I want to ask how to change some letter in my file with other letter in spesific line
eg.
data.txt
1
1
1
0
0
0
0
for example i want to change the 4th line with character 1.
How could I do it by SED or AWK.
I have tried to run this code but actually did not... (3 Replies)
Hi,
I need to replace, as the title says, the first letter of each line (when it's not a number) by the same letter, but capital.
For instance :
hello
Who
123pass
Would become :
Hello
Who
123pass
Is there a way with sed to do that ? Or other unix command ?
Thank you :) (7 Replies)
I have a pbd file, which has the following format:
TITLE Protein X
MODEL 1
ATOM 1 N PRO 24 45.220 71.410 43.810 1.00 0.00
ATOM 2 H1 PRO 24 45.800 71.310 42.000 1.00 0.00
TER
ENDMDL
Column 22 is the chain... (5 Replies)
AWK command to get file content until 3 occurrence of pattern match,
INPUT FILE:
JMS_BODY_FIELD:JMSText = <?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<custOptIn xmlns="http://com/walm/ta/cu/ccs/xml2">
<person>Romi</person>
<appName>SAP</appName>
</custOptIn>
... (4 Replies)
Discussion started by: prince1987
4 Replies
LEARN ABOUT OSX
locale::codes::langfam
Locale::Codes::LangFam(3pm) Perl Programmers Reference Guide Locale::Codes::LangFam(3pm)NAME
Locale::Codes::LangFam - standard codes for language extension identification
SYNOPSIS
use Locale::Codes::LangFam;
$lext = code2langfam('apa'); # $lext gets 'Apache languages'
$code = langfam2code('Apache languages'); # $code gets 'apa'
@codes = all_langfam_codes();
@names = all_langfam_names();
DESCRIPTION
The "Locale::Codes::LangFam" module provides access to standard codes used for identifying language families, such as those as defined in
ISO 639-5.
Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default ISO 639-5
language family codes will be used.
SUPPORTED CODE SETS
There are several different code sets you can use for identifying language families. A code set may be specified using either a name, or a
constant that is automatically exported by this module.
For example, the two are equivalent:
$lext = code2langfam('apa','alpha');
$lext = code2langfam('apa',LOCALE_LANGFAM_ALPHA);
The codesets currently supported are:
alpha
This is the set of three-letter (lowercase) codes from ISO 639-5 such as 'apa' for Apache languages.
This is the default code set.
ROUTINES
code2langfam ( CODE [,CODESET] )
langfam2code ( NAME [,CODESET] )
langfam_code2code ( CODE ,CODESET ,CODESET2 )
all_langfam_codes ( [CODESET] )
all_langfam_names ( [CODESET] )
Locale::Codes::LangFam::rename_langfam ( CODE ,NEW_NAME [,CODESET] )
Locale::Codes::LangFam::add_langfam ( CODE ,NAME [,CODESET] )
Locale::Codes::LangFam::delete_langfam ( CODE [,CODESET] )
Locale::Codes::LangFam::add_langfam_alias ( NAME ,NEW_NAME )
Locale::Codes::LangFam::delete_langfam_alias ( NAME )
Locale::Codes::LangFam::rename_langfam_code ( CODE ,NEW_CODE [,CODESET] )
Locale::Codes::LangFam::add_langfam_code_alias ( CODE ,NEW_CODE [,CODESET] )
Locale::Codes::LangFam::delete_langfam_code_alias ( CODE [,CODESET] )
These routines are all documented in the Locale::Codes::API man page.
SEE ALSO
Locale::Codes
The Locale-Codes distribution.
Locale::Codes::API
The list of functions supported by this module.
http://www.loc.gov/standards/iso639-5/id.php
ISO 639-5 .
AUTHOR
See Locale::Codes for full author history.
Currently maintained by Sullivan Beck (sbeck@cpan.org).
COPYRIGHT
Copyright (c) 2011-2012 Sullivan Beck
This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
perl v5.16.2 2012-10-11 Locale::Codes::LangFam(3pm)