Program to match the id and replace one letter in the content
Hi all,
I have one file with a sequence and the other file which says the position and the letter to be changed. I have to match two files and replace content. Example is shown which will describe what I want to do. For example, file 1 has many sequences and few are shown below
sequence file:
and the second file has the id which is enclosed in between || in the first file and the letters to be changed. Now I have to match the id column with the header line in the seuqence file |P78363|. if they are same, do the change as mentioned and write in the output file.
the output file should contain the sequences of the changed letters and the change name in the header as highlighted (bold) in the below code
Could anyone please help with a script which can do this. It will be bery helpful
Note: this is not a school exercise.
Hi,
Long list of Input file1 content:
1285_t
4860_i
4817_v
8288_c
9626_a
.
.
.
Long list of Input file2 content:
1285_t chris germany
8288_c steve england
9626_a dave swiss
9260_s stephanie denmark
.
.
. (14 Replies)
Hi,
im able to search for string in a file (ex: grep -w "$a" input.txt). but i have to search for the uppercase of a string in a file where upper case of the file content matches something like below.
where upper("$a")== converted to upper case string in (input.txt)
can someone please provide... (5 Replies)
Good afternoon all,
I want to ask how to change some letter in my file with other letter in spesific line
eg.
data.txt
1
1
1
0
0
0
0
for example i want to change the 4th line with character 1.
How could I do it by SED or AWK.
I have tried to run this code but actually did not... (3 Replies)
Hi,
I need to replace, as the title says, the first letter of each line (when it's not a number) by the same letter, but capital.
For instance :
hello
Who
123pass
Would become :
Hello
Who
123pass
Is there a way with sed to do that ? Or other unix command ?
Thank you :) (7 Replies)
I have a pbd file, which has the following format:
TITLE Protein X
MODEL 1
ATOM 1 N PRO 24 45.220 71.410 43.810 1.00 0.00
ATOM 2 H1 PRO 24 45.800 71.310 42.000 1.00 0.00
TER
ENDMDL
Column 22 is the chain... (5 Replies)
AWK command to get file content until 3 occurrence of pattern match,
INPUT FILE:
JMS_BODY_FIELD:JMSText = <?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<custOptIn xmlns="http://com/walm/ta/cu/ccs/xml2">
<person>Romi</person>
<appName>SAP</appName>
</custOptIn>
... (4 Replies)
Discussion started by: prince1987
4 Replies
LEARN ABOUT OSX
replace
REPLACE(1) MySQL Database System REPLACE(1)NAME
replace - a string-replacement utility
SYNOPSIS
replace arguments
DESCRIPTION
The replace utility program changes strings in place in files or on the standard input.
Note
The replace utility is deprecated as of MySQL 5.7.18 and is removed in MySQL 8.0.
Invoke replace in one of the following ways:
shell> replace from to [from to] ... -- file_name [file_name] ...
shell> replace from to [from to] ... < file_name
from represents a string to look for and to represents its replacement. There can be one or more pairs of strings.
Use the -- option to indicate where the string-replacement list ends and the file names begin. In this case, any file named on the command
line is modified in place, so you may want to make a copy of the original before converting it. replace prints a message indicating which
of the input files it actually modifies.
If the -- option is not given, replace reads the standard input and writes to the standard output.
replace uses a finite state machine to match longer strings first. It can be used to swap strings. For example, the following command swaps
a and b in the given files, file1 and file2:
shell> replace a b b a -- file1 file2 ...
replace supports the following options.
o -?, -I
Display a help message and exit.
o -#debug_options
Enable debugging.
o -s
Silent mode. Print less information what the program does.
o -v
Verbose mode. Print more information about what the program does.
o -V
Display version information and exit.
COPYRIGHT
Copyright (C) 1997, 2018, Oracle and/or its affiliates. All rights reserved.
This documentation is free software; you can redistribute it and/or modify it only under the terms of the GNU General Public License as
published by the Free Software Foundation; version 2 of the License.
This documentation is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with the program; if not, write to the Free Software Foundation,
Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA or see http://www.gnu.org/licenses/.
SEE ALSO
For more information, please refer to the MySQL Reference Manual, which may already be installed locally and which is also available online
at http://dev.mysql.com/doc/.
AUTHOR
Oracle Corporation (http://dev.mysql.com/).
MySQL 5.7 06/07/2018 REPLACE(1)