Hi all,
I have a pattern like this in a file:
123 4 56 789
234 5 67 789
121 3 56 789
222 4 65 789
321 6 90 100
478 8 40 789
243 7 80 789
How can I count the number of occurences of '789' (4th column) in this set...?
Thanks for all your help!
K (7 Replies)
I have enclosed the script. I am able to find the files that contain my search string but when I try to count the occurences within the file I get zero always. Any help on this.
#!/usr/bin/perl
my $find = $ARGV;
my $replace = $ARGV;
my $glob = $ARGV;
@filelist = <*$glob>;
# process each... (22 Replies)
I want to count the number of occurences of say "200" in a file but that file also contains various stuff including dtaes like 2007 or smtg like 200.1 so count i am getting by doing grep -c "word" file is wrong
Please help!!!!! (8 Replies)
Hello,
I have a text file with n lines in the following format (9 column fields):
Example:
contig00012 149606 G C 49 68 60 18 c$cccccacccccccccc^c
I need to count the number of lower-case and upper-case occurences in column 9, respectively, of the... (3 Replies)
im trying to count the number of occurences of column 2 value(starting from KKK*) of the below file, file.txt
using the code cat file.txt | awk ' BEGIN { print "Category Counts"} {FS=","} {NR > 2} { cats = cats + 1} END { for(c in cats) { print c, "=", cats} } '
but its returning as
... (6 Replies)
Hi,
i am in need of an awk script to accomplish the following:
Input table looks like:
Student1 arts
Student2 science
Student3 arts
Student4 science
Student5 science
Student6 science
Student7 science
Student8 science
Student9 science
Student10 science
Student11 science... (8 Replies)
hi,
I have a text..and i need to find a pattern in the text and count to the no of times the pattern occured.
i have used grep command ..but the problem is , it shows the occurrences of the pattern but doesn't count no of times the pattern occuries. (5 Replies)
Hi Guys,
I have 2 files like below
file1
xx
yy
file2
b
yy
b2
xx
c1
yy
xx
yy
Now I want an idea which can count occurences of text from file1 and file2 so outbout would be kind of (9 Replies)
I have some text files in a folder f1 with 10 columns. The first five columns of a file are shown below.
aab abb 263-455 263 455
aab abb 263-455 263 455
aab abb 263-455 263 455
bbb abb 26-455 26 455
bbb abb 26-455 26 455
bbb aka 264-266 264 266
bga bga 230-232 230 ... (10 Replies)
This question is asked in an interview today that I have to return output with each PID number and the count of each PID number logged today. Here is the script that I have written. Can you confirm if that would work or not. The interviewer didn't said if my answer is correct or not. Can someone... (5 Replies)
Discussion started by: Subodh Kumar
5 Replies
LEARN ABOUT DEBIAN
bio::mage::tools::mgedontologyclassentry
MAGE::Tools::MGEDOntologyClassEntry(3pm) User Contributed Perl Documentation MAGE::Tools::MGEDOntologyClassEntry(3pm)Bio::MAGE::Tools::MGEDOntologyClassEntry
SYNOPSIS
use Bio::MAGE::Tools::MGEDOntologyClassEntry;
use Bio::MAGE::Tools::MGEDOntologyHelper;
use Bio::MAGE::QuantitationType::MeasuredSignal;
my $mo_helper = Bio::MAGE::Tools::MGEDOntologyHelper->new(
sourceFile => 'MGEDOntology.owl',
);
my $qt = Bio::MAGE::QuantitationType::MeasuredSignal->new(
identifier => 'QT1',
isBackground => 'false',
);
my $ont_entry = Bio::MAGE::Tools::MGEDOntologyClassEntry->new(
parentObject => $qt,
className => 'QuantitationType',
association => 'DataType',
values => {
DataType => 'float',
},
ontology => $mo_helper,
);
DESCRIPTION
This provides functionaliy for an ontology-aware OntologyEntry class for entries of type Class.
Bio::MAGE::Tools::MGEDOntologyClassEntry is a concrete class.
Superclass is: Bio::MAGE::Tools::MGEDOntologyEntry
Subclasses are: none
ATTRIBUTES
Attributes are simple data types that belong to a single instance of a class. In the Perl implementation of the MAGE-OM classes, the
interface to attributes is implemented using separate setter and getter methods for each attribute.
mgedOntologyClass
Stores the name of the equivalent class or property in the MGED Ontology for this OntologyEntry
isInstantiable
Stores true if the class is an instantiable one.
isInstantiable
Contains a hash reference to a list of OM clases that are circular references which should only be followed one level.
BUGS
Please send bug reports to the project mailing list: (mged-mage 'at' lists 'dot' sf 'dot' net)
AUTHOR
Eric W. Deutsch (edeutsch 'at' systemsbiology 'dot' org) followup work by Jason E. Stewart (jasons 'at' cpan 'dot' org)
SEE ALSO perl(1).
POD ERRORS
Hey! The above document had some coding errors, which are explained below:
Around line 655:
You forgot a '=back' before '=head1'
perl v5.10.1 2006-08-23 MAGE::Tools::MGEDOntologyClassEntry(3pm)