I am trying to use a script to replace the header of each file, whose filename are stored within the array $test, using the sed command within a Perl script as follows:
$count = 0;
while ( $count < $#test )
{
`sed -e 's/BIOGRF 321/BIOGRF 332/g' ${test} > 0`;
`cat 0 >... (2 Replies)
Hi ,
This script working for fine if pass script-name.sh Jul/10/2007 ,I want to pass 20070710(yyyymmdd) .Please any help it should be appereciated.
use Time::Local;
my $d = $ARGV;
my $t = $ARGV;
my $m = "";
@d = split /\//, $d;
@t = split /:/, $t;
if ( $d eq "Jan" ) { $m = 0 }... (7 Replies)
so in unix this command works works and shows me a list of directories
find . -name \*.xls -exec dirname {} \; | sort -u | > list.txt
but when i try running a perl script to run this command
my $query = 'find . -name \*.xls -exec dirname {} \; | sort -u | > list.txt';... (2 Replies)
How can i print the output of a perl script on a unix console and redirect the same in a log file under same directory simultaneously ?
Like in Shell script, we use tee, is there anything in Perl or any other option ? (2 Replies)
I am completely new to perl programming. My father is helping me learn said programming language. However, I am stuck on one of the assignments he has given me, and I can't find very much help with it via google, either because I have a tiny attention span, or because I can be very very dense.
... (4 Replies)
Hi all,
Not sure if this should be in the programming forum, but I believe it will get more response under the Shell Programming and Scripting FORUM.
Am trying to write a customized df script in Perl and need some help with regards to using arrays and file handlers.
At the moment am... (3 Replies)
we create a HP-UX software depot with a new perl-modul. after installation of the software depot, the perl module
i can't find with instmodsh in the inventory for installed Perl modules.
- i have learned of using instmodsh command : i find out what modules are already installed on my system.
... (0 Replies)
Hi all,
I have written a perl code and stored the data into Data structure using Data::Dumper module.
But not sure how to retreive the data from the Data::Dumper.
Eg.
Based on the key value( Here CRYPTO-6-IKMP_MODE_FAILURE I should be able to access the internal hash elements(keys) ... (1 Reply)
My issue is that the perl script (as I have done it so far) created empty branches when I try to check some branches on existence.
I am using multydimentional hashes: found it as the best way for information that I need to handle. Saing multidimentional I means hash of hashes ... So, I have
... (2 Replies)
I have reviewed many examples on-line about running another process (either PERL or shell command or a program), but do not find any usefull for my needs way. (Reviewed and not useful the system(), 'back ticks', exec() and open())
I would like to run another PERL-script from first one, not... (1 Reply)
Discussion started by: alex_5161
1 Replies
LEARN ABOUT DEBIAN
bp_revtrans-motif
BP_REVTRANS-MOTIF(1p) User Contributed Perl Documentation BP_REVTRANS-MOTIF(1p)NAME
revtrans-motif - Reverse translate a Profam-like protein motif
VERSION
Version 0.01
SYNOPSIS
From a file:
revtrans-motif.pl -i motifs.txt
Using pipes:
revtrans-motif.pl < motifs.txt > output.txt
Using interactively at the command prompt:
$ revtrans-motif.pl
MAAEEL[VIKP]
1. ATGGCNGCNGARGARYTNVHN
[^P]H(IW){2,3}
2. NDNCAY(ATHTGG){2,3}
DESCRIPTION
This script takes a protein motif as input and returns a degenerate oligonucleotide sequence corresponding to it. The main reason for doing
this is to design degenerate primers that amplify a given sequence pattern.
The input motif consists of a string of one-letter residues, with any of the following syntactic elements:
[...] : Redundant position.
A position in which more than one residue is allowed. Example:
[TS]YW[RKSD]
^^ ^^^^
[^...] : Negated position.
A position in which any residue is allowed, saved for those between brackets. Example:
[^PW]MK[LAE]
^^
(...){n,m,...} : Repeated motif.
A motif that is repeated n or m times. It can have any of the previous syntactic elements. Example:
A[SN]C(TXX){2,4,8}
^^^
The allowed letters are those that correspond to the 20 natural aminoacids, plus:
B = N + D
Z = Q + E
X = All
OPTIONS -i input-file:
A file with a list of motifs to reverse translate.
-h
Display this help message.
AUTHOR
Bruno Vecchi, "vecchi.b at gmail.com"
BUGS
Please report any bugs or feature requests to "vecchi.b at gmail.com"
COPYRIGHT & LICENSE
Copyright 2009 Bruno Vecchi, all rights reserved.
This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
perl v5.14.2 2012-03-02 BP_REVTRANS-MOTIF(1p)