can anyone see the awk syntax error near line 1? I keep getting this error and I'm not familiar with awk very well yet so it is hard for me to see the errors.
fyi: deleteuser* refers to files in the directory where each one ends with a different date
ls -1 /mfupload/prod02/ftp/deleteuser* |... (12 Replies)
I generate a fullpath variable two different ways:
1) concat two variables rootpath and relpath to give me fullpath
2) use 'find' to get the fullpath
when I echo the variable, I get the same output for both. However,
I print the variable from method 1 in the below loop I get "awk syntax... (0 Replies)
hi there
i write one awk script file in shell programing
the code is related to dd/mm/yy to month, day year format
but i get an error
please can anybody help me out in this problem ??????
i give my code here including error
awk `
# date-month -- convert mm/dd/yy to month day,... (2 Replies)
Hi, I can't see what is wrong with the following command.
I am extracting a dollar amount (AMT_REJ, 6th field) from a comma delimited record and need to output it as numeric, removing the $sign and decimal point and output to another file. Everything seems to work except the $ sign which I need... (1 Reply)
Hi All,
I wrote a simple script.sh program
for i in seq (22)
do awk '$1==${i}' file1.txt|awk '{print $2}'> file${i}_study.txt
done
and then run it
%bash
%chmod +x script.sh
% ./script.sh
Give me error
awk: $1==${i}
awk: ^ syntax error
Do you have any idea why... (3 Replies)
Could somebody gently point out the error of my ways in the below (the flu I'm fighting might be contributing to my current haplessness)
awk -F="\t" \
'{
for (i = 1; i <= NR; i++);
FNR == i;
{
if (length($3) < 56 && length($1) > 56)
$1=($1" "$2); $2=$3; $3=$4;
... (1 Reply)
I know the below code worked, but the syntax appears to be wrong and I can not seem to correct it. Thank you :).
awk 'FNR==NR {E; next }>$3 in E {print $3, $5}' medical_exome__genes.txt RefSeqGene.txt > update.txt
awk: cmd. line:1: FNR==NR {E; next }>$3 in E {print $3, $5}
awk: cmd.... (2 Replies)
awk -F, ' NR>1 {
BEGIN{
chr=$2
}
END{
for (k in chr) {print k}
}
} ' $gene_file
I've a really simple code. I want to store gene name and it's chromosome and in the end print them.
I'm skipping line one as it contains headers.
But I don't know why I get error as: (2 Replies)
Discussion started by: genome
2 Replies
LEARN ABOUT LINUX
zegrep
ZGREP(1) General Commands Manual ZGREP(1)NAME
zgrep - search possibly compressed files for a regular expression
SYNOPSIS
zgrep [ grep_options ] [ -e ] pattern filename...
DESCRIPTION
Zgrep invokes grep on compressed or gzipped files. These grep options will cause zgrep to terminate with an error code:
(-[drRzZ]|--di*|--exc*|--inc*|--rec*|--nu*). All other options specified are passed directly to grep. If no file is specified, then the
standard input is decompressed if necessary and fed to grep. Otherwise the given files are uncompressed if necessary and fed to grep.
If the GREP environment variable is set, zgrep uses it as the grep program to be invoked.
EXIT CODE
2 - An option that is not supported was specified.
AUTHOR
Charles Levert (charles@comm.polymtl.ca)
SEE ALSO grep(1), gzexe(1), gzip(1), zdiff(1), zforce(1), zmore(1), znew(1)ZGREP(1)