Hi,
I have a file such as:
---
>contig00001 length=35524 numreads=2944
gACGCCGCGCGCCGCGGCCAGGGCTGGCCCA
CAGGCCGCGCGGCGTCGGCTGGCTGAG
>contig00002 length=4242 numreads=43423
ATGCCGAAGGTCCGCCTGGGGCTGG
CGCCGGGAGCATGTAGCG
---
I would like to concatenate the lines not starting with ">"... (9 Replies)
Hi ,
I'm looking for a way to merge two lines only for a given pattern / condition.
Input :
abcd/dad + -49.201 2.09 -49.5 34 ewrew rewtre *
fdsgfds/dsgf/sdfdsfasdd +
-4.30 0.62 -49.5 45 sdfdsf cvbbv *
sdfds/retret/asdsaddsa +
... (1 Reply)
Hi,
I have requirement that I need to split my input file into two files based on a search pattern "abc"
For eg. my input file has below content
abc
defgh
zyx
I need file 1 with
abc
and file2 with
defgh
zyx
I can use grep command to acheive this. But with grep I need... (8 Replies)
Hi, just tried some script, awk, sed for the last 2 hours and now need help.
Let's say I have a huge file of 800,000 lines like this :
It's a tedious job to look through it, I'd like to remove those useless lines in it as there's a few thousands :
Or to be even more precise :
if line1 =... (6 Replies)
Input:
09:43:46,538 INFO first text
10:45:46,538 INFO second
text
11:00:46,538 INFO third
more
text
Output:
09:43:46,538 INFO first text
10:45:46,538 INFO second text
11:00:46,538 INFO third more text
The rule is to append all lines so each line contains this format... (7 Replies)
Hi ,
I want to insert data into a new file after grepping specific pattern . for more info please read following
for example:
abc=12345678902222
def=45678904444
-------
-------
INAVLID ABC
I want to "INAVLID ABC" grep above pattern from multiple files and want to write abc value and ... (3 Replies)
Hi,
I need to delete all lines in the file using vi editor which start with word aternqaco.
Please assist.
aternqaco.__oracle_base='/amdbqa01/app/oracle'#ORACLE_BASE set from environment
aternqa.__oracle_base='/amdbqa01/app/oracle'#ORACLE_BASE set from environment... (3 Replies)
Gents,
I am trying to delete all lines which start with "H" character, but keeping the fist header. Example In the input file I will delete all lines starting from line 8 which contents character "H" to the end of the file.
I try
sed '8,10000{/^H/d;}' file
But as don't know the end... (1 Reply)
I have input file as below I need to check for a pattern and if it is there in file then I need to print all the lines below BEGIN and END keyword. Could you please help me how to get this in AIX using sed or awk.
Input file:
ABC
******** BEGIN *****
My name is Amit.
I am learning unix.... (8 Replies)
Discussion started by: Amit Joshi
8 Replies
LEARN ABOUT SUNOS
fmt
fmt(1) User Commands fmt(1)NAME
fmt - simple text formatters
SYNOPSIS
fmt [-cs] [-w width | -width] [inputfile...]
DESCRIPTION
fmt is a simple text formatter that fills and joins lines to produce output lines of (up to) the number of characters specified in the -w
width option. The default width is 72. fmt concatenates the inputfiles listed as arguments. If none are given, fmt formats text from the
standard input.
Blank lines are preserved in the output, as is the spacing between words. fmt does not fill nor split lines beginning with a `.' (dot), for
compatibility with
nroff(1). Nor does it fill or split a set of contiguous non-blank lines which is determined to be a mail header, the first line of which
must begin with "From".
Indentation is preserved in the output, and input lines with differing indentation are not joined (unless -c is used).
fmt can also be used as an in-line text filter for vi(1). The vi command:
!}fmt
reformats the text between the cursor location and the end of the paragraph.
OPTIONS -c Crown margin mode. Preserve the indentation of the first two lines within a paragraph, and align the left margin of
each subsequent line with that of the second line. This is useful for tagged paragraphs.
-s Split lines only. Do not join short lines to form longer ones. This prevents sample lines of code, and other such
formatted text, from being unduly combined.
-w width | -width Fill output lines to up to width columns.
OPERANDS
inputfile Input file.
ENVIRONMENT VARIABLES
See environ(5) for a description of the LC_CTYPE environment variable that affects the execution of fmt.
ATTRIBUTES
See attributes(5) for descriptions of the following attributes:
+-----------------------------+-----------------------------+
| ATTRIBUTE TYPE | ATTRIBUTE VALUE |
+-----------------------------+-----------------------------+
|Availability |SUNWcsu |
+-----------------------------+-----------------------------+
SEE ALSO nroff(1), vi(1), attributes(5), environ(5)NOTES
The -width option is acceptable for BSD compatibility, but it may go away in future releases.
SunOS 5.10 9 May 1997 fmt(1)