Hi,
I have a file such as:
---
>contig00001 length=35524 numreads=2944
gACGCCGCGCGCCGCGGCCAGGGCTGGCCCA
CAGGCCGCGCGGCGTCGGCTGGCTGAG
>contig00002 length=4242 numreads=43423
ATGCCGAAGGTCCGCCTGGGGCTGG
CGCCGGGAGCATGTAGCG
---
I would like to concatenate the lines not starting with ">"... (9 Replies)
Hi ,
I'm looking for a way to merge two lines only for a given pattern / condition.
Input :
abcd/dad + -49.201 2.09 -49.5 34 ewrew rewtre *
fdsgfds/dsgf/sdfdsfasdd +
-4.30 0.62 -49.5 45 sdfdsf cvbbv *
sdfds/retret/asdsaddsa +
... (1 Reply)
Hi,
I have requirement that I need to split my input file into two files based on a search pattern "abc"
For eg. my input file has below content
abc
defgh
zyx
I need file 1 with
abc
and file2 with
defgh
zyx
I can use grep command to acheive this. But with grep I need... (8 Replies)
Hi, just tried some script, awk, sed for the last 2 hours and now need help.
Let's say I have a huge file of 800,000 lines like this :
It's a tedious job to look through it, I'd like to remove those useless lines in it as there's a few thousands :
Or to be even more precise :
if line1 =... (6 Replies)
Input:
09:43:46,538 INFO first text
10:45:46,538 INFO second
text
11:00:46,538 INFO third
more
text
Output:
09:43:46,538 INFO first text
10:45:46,538 INFO second text
11:00:46,538 INFO third more text
The rule is to append all lines so each line contains this format... (7 Replies)
Hi ,
I want to insert data into a new file after grepping specific pattern . for more info please read following
for example:
abc=12345678902222
def=45678904444
-------
-------
INAVLID ABC
I want to "INAVLID ABC" grep above pattern from multiple files and want to write abc value and ... (3 Replies)
Hi,
I need to delete all lines in the file using vi editor which start with word aternqaco.
Please assist.
aternqaco.__oracle_base='/amdbqa01/app/oracle'#ORACLE_BASE set from environment
aternqa.__oracle_base='/amdbqa01/app/oracle'#ORACLE_BASE set from environment... (3 Replies)
Gents,
I am trying to delete all lines which start with "H" character, but keeping the fist header. Example In the input file I will delete all lines starting from line 8 which contents character "H" to the end of the file.
I try
sed '8,10000{/^H/d;}' file
But as don't know the end... (1 Reply)
I have input file as below I need to check for a pattern and if it is there in file then I need to print all the lines below BEGIN and END keyword. Could you please help me how to get this in AIX using sed or awk.
Input file:
ABC
******** BEGIN *****
My name is Amit.
I am learning unix.... (8 Replies)
Discussion started by: Amit Joshi
8 Replies
LEARN ABOUT PLAN9
grep
GREP(1) General Commands Manual GREP(1)NAME
grep - search a file for a pattern
SYNOPSIS
grep [ option ... ] pattern [ file ... ]
DESCRIPTION
Grep searches the input files (standard input default) for lines (with newlines excluded) that match the pattern, a regular expression as
defined in regexp(6). Normally, each line matching the pattern is `selected', and each selected line is copied to the standard output.
The options are
-c Print only a count of matching lines.
-h Do not print file name tags (headers) with output lines.
-i Ignore alphabetic case distinctions. The implementation folds into lower case all letters in the pattern and input before interpre-
tation. Matched lines are printed in their original form.
-l (ell) Print the names of files with selected lines; don't print the lines.
-L Print the names of files with no selected lines; the converse of -l.
-n Mark each printed line with its line number counted in its file.
-s Produce no output, but return status.
-v Reverse: print lines that do not match the pattern.
Output lines are tagged by file name when there is more than one input file. (To force this tagging, include /dev/null as a file name
argument.)
Care should be taken when using the shell metacharacters $*[^|()= and newline in pattern; it is safest to enclose the entire expression in
single quotes '...'.
SOURCE
/sys/src/cmd/grep.c
SEE ALSO ed(1), awk(1), sed(1), sam(1), regexp(6)DIAGNOSTICS
Exit status is null if any lines are selected, or non-null when no lines are selected or an error occurs.
GREP(1)