06-21-2013
Post what you've tried so we can comment on or correct it, respectively.
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I need a hand with this simple script,
in Unix i have a variable called portal:
$ echo $portal
chu0
when i use awk this variable is not recognized. How can i make awk recognize and print the value of this variable, since the output is not shown i.e.
awk '
BEGIN {printf("%4s\t%14s\n",... (3 Replies)
Discussion started by: alexcol
3 Replies
2. Shell Programming and Scripting
when I execute this awk stmt ..
awk "/log_directory/ { print $5}" /opt/dba/oraadmin/tools/tmp_purge_op.log
it's returning the whole line as ..
IRMD118_LISTENER1 parameter "log_directory" set to /opt/oracle/10.2/network/log/
my expected output is : /opt/oracle/10.2/network/log
what... (7 Replies)
Discussion started by: talashil
7 Replies
3. Shell Programming and Scripting
Whats the syntax to find all lines that matches a text and print out specific fields after the match?
ex:
1: some random text
2: Full name: John E. Smith
3: some random text
4: Full name: Mary J. Lue
5: some random text
So I'd like to print out First names or last names or everything... (2 Replies)
Discussion started by: linuxdude
2 Replies
4. Shell Programming and Scripting
Hi,
I just don't understand awk. I think I'm close here but can someone give me a hand to finish this little parsing routine ?
the input file is formatted like this:
District 2502110
Gsub 2384889
Gsub 1428180
District 2502220
Gsub 1466390
Gsub 1466389
Gsub 1466388
Gsub 1466386
Gsub... (4 Replies)
Discussion started by: fwellers
4 Replies
5. UNIX for Dummies Questions & Answers
awk '!_++'
Most importantly, I want to know what the underscore does "!_"
But ideally, please breakdown the whole thing. It is supposed to remove duplicate lines when found in a file. (1 Reply)
Discussion started by: glev2005
1 Replies
6. Shell Programming and Scripting
Hello;
Trying to figure out how to keep just the contents between the two search lines:
awk '/regexp_1/ ,/regexp_2/'
I do not want lines containing regexp_1 and regexp_2 in the output.
Thank you for any ideas
Video tutorial on how to use code tags in The UNIX and Linux Forums. (5 Replies)
Discussion started by: delphys
5 Replies
7. Shell Programming and Scripting
Hello;
I need to print two previous lines after searching for a reg exp:
awk '/haywood/'
should produce the following
===================
p9J46THe020804 89922 Tue Oct 18 21:06 MAILER-DAEMON
(host map: lookup (haywood.com): deferred)
... (1 Reply)
Discussion started by: delphys
1 Replies
8. Shell Programming and Scripting
Hi,
I'm new to AWK and I'm having problems comparing a field to a string variable.
/ARTIST/ {x = $2}
$1 ~ x {print $0}My code tries to find a record with the string "ARTIST". Once it finds it, it stores the second field of the record into a variable. I don't know what the problem is for the... (7 Replies)
Discussion started by: klusps
7 Replies
9. Shell Programming and Scripting
Hi,
I have a file such that:
40454,31,48,4,1304.967741935484,1
31708,25,48,4,1268.32,1
20900,64501,671,788,0.3240259840932699,0
20137,51358,834,743,0.3920908135051988,0
I want to replace the 6th column by "ones" if it is 1, and with "zeros" if it is 0.
Thanks. (6 Replies)
Discussion started by: shekhar2010us
6 Replies
10. Shell Programming and Scripting
Hi, this must be a simple but this is my first interaction with shell and awk.
following is a log file needed to parse (2 lines separated by a line break for clarity):
2013-07-27 13:32:09,043 - ERROR - PerformanceUtility - Thread-14 - Performance - 9b348407-4f57-4983-a057-a55669821f68 |... (12 Replies)
Discussion started by: liv2luv
12 Replies
LEARN ABOUT DEBIAN
ace::sequence::transcript
Ace::Sequence::Transcript(3pm) User Contributed Perl Documentation Ace::Sequence::Transcript(3pm)
NAME
Ace::Sequence::Transcript - Simple "Gene" Object
SYNOPSIS
# open database connection and get an Ace::Object sequence
use Ace::Sequence;
# get a megabase from the middle of chromosome I
$seq = Ace::Sequence->new(-name => 'CHROMOSOME_I,
-db => $db,
-offset => 3_000_000,
-length => 1_000_000);
# get all the transcripts
@genes = $seq->transcripts;
# get the exons from the first one
@exons = $genes[0]->exons;
# get the introns
@introns = $genes[0]->introns
# get the CDSs (NOT IMPLEMENTED YET!)
@cds = $genes[0]->cds;
DESCRIPTION
Ace::Sequence::Gene is a subclass of Ace::Sequence::Feature. It inherits all the methods of Ace::Sequence::Feature, but adds the ability
to retrieve the annotated introns and exons of the gene.
OBJECT CREATION
You will not ordinarily create an Ace::Sequence::Gene object directly. Instead, objects will be created in response to a transcripts()
call to an Ace::Sequence object.
OBJECT METHODS
Most methods are inherited from Ace::Sequence::Feature. The following methods are also supported:
exons()
@exons = $gene->exons;
Return a list of Ace::Sequence::Feature objects corresponding to annotated exons.
introns()
@introns = $gene->introns;
Return a list of Ace::Sequence::Feature objects corresponding to annotated introns.
cds()
@cds = $gene->cds;
Return a list of Ace::Sequence::Feature objects corresponding to coding sequence. THIS IS NOT YET IMPLEMENTED.
relative()
$relative = $gene->relative;
$gene->relative(1);
This turns on and off relative coordinates. By default, the exons and intron features will be returned in the coordinate system used
by the gene. If relative() is set to a true value, then coordinates will be expressed as relative to the start of the gene. The first
exon will (usually) be 1.
SEE ALSO
Ace, Ace::Object, Ace::Sequence,Ace::Sequence::Homol, Ace::Sequence::Feature, Ace::Sequence::FeatureList, GFF
AUTHOR
Lincoln Stein <lstein@cshl.org> with extensive help from Jean Thierry-Mieg <mieg@kaa.crbm.cnrs-mop.fr>
Copyright (c) 1999, Lincoln D. Stein
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
POD ERRORS
Hey! The above document had some coding errors, which are explained below:
Around line 168:
You forgot a '=back' before '=head1'
perl v5.14.2 2001-05-22 Ace::Sequence::Transcript(3pm)