Apologies if this has been covered - I did search but couldn't find what I was looking for.
I have a simple X-Y input file. I want to convert it from two columns into 8 columns - 4 pairs of X-Y data. So my input file looks like
X1 Y1
X2 Y2
X3 Y3
X4 Y4
X5 Y5
etc
And I want it to look... (8 Replies)
Dear Unix Gurus,
I have a sample data set that looks like this
y1 y2 y3 y4 y5
x1 0.3 0.5 2.3 3.1 5.1
x2 1.2 4.1 3.5 1.7 1.2
x3 3.1 2.1 1.0 4.1 2.1
x4 5.0 4.0 6.0 7.0 1.1
I want to open it up so that I get
x1 y1 0.3
x2 y1 1.2
x3 y1 3.1
x4 y1 5.0
x1 y2 0.5
x2 y2... (3 Replies)
Hi Friends
I have the following input data in 2 columns.
SNo 1
I1 Value
I2 Value
I3 Value
SNo 2
I4 Value
I5 Value
I6 Value
I7 Value
SNo 3
I8 Value
I9 Value
...............
................
SNo N (1 Reply)
I have this data
M36 AREA INFORMATION
MDN = 0485009346
ESN = H'15fda0b0
TYPE = HLR
RESULT = NOK
REASON = UNRECOGNIZED MIN
COMPLETED
AREA INFORMATION
MDN = 0498044402
ESN = H'15fdac11
TYPE... (2 Replies)
Hi all,
Is there a way to convert full data matrix to linearised left data matrix?
e.g full data matrix
Bh1 Bh2 Bh3 Bh4 Bh5 Bh6 Bh7
Bh1 0 0.241058 0.236129 0.244397 0.237479 0.240767 0.245245
Bh2 0.241058 0 0.240594 0.241931 0.241975 ... (8 Replies)
Hi All,
I have a matrix stored in a file matrix.mtx and looks like this:
1 0.5 0.33 0.25
0 0.33 0.25 0.2
0 0 0 0.16
0 0 0 0.14
I want to convert this matrix to its sparse representation like the one give below (sparse_matrix.mtx). This means that above matrix has been converted to its... (1 Reply)
is it possible to count the number of keys based on state and cell and output it as a simple matrix.
Ex: cell1-state1 has 2 keys
cell3-state1 has 4 keys.
Note: Insert 0 if no data available.
input
key states cell
key1 state1 cell1
key1 state2 cell1
key1 ... (21 Replies)
Hi There,
I want to convert the following data into tabular matrix, based on column 4th and 5th, and output the column 10th value
chr1 2804449 2804450 NACpG_1 window1 + chr1 2804443 2804475 1
chr1 2804450 2804451 NACpG_1 window2 + chr1 2804443 ... (3 Replies)
How can i convert two columns in to o and 1 matrix. thnks
Input
a c1
b c2
c c1
d c3
e c4
output
c1 c2 c3 c4
a 1 0 0 0
b 0 1 0 0
c 1 0 0 0
d 0 0 ... (5 Replies)
Discussion started by: quincyjones
5 Replies
LEARN ABOUT DEBIAN
tfbs::matrix
TFBS::Matrix(3pm) User Contributed Perl Documentation TFBS::Matrix(3pm)NAME
TFBS::Matrix - base class for matrix patterns, containing methods common to all
DESCRIPTION
TFBS::Matrix is a base class consisting of universal constructor called by its subclasses (TFBS::Matrix::*), and matrix manipulation
methods that are independent of the matrix type. It is not meant to be instantiated itself.
FEEDBACK
Please send bug reports and other comments to the author.
AUTHOR - Boris Lenhard
Boris Lenhard <Boris.Lenhard@cgb.ki.se> Modified by Eivind Valen eivind.valen@gmail.com
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are preceded with an underscore.
matrix
Title : matrix
Usage : my $matrix = $pwm->matrix();
$pwm->matrix( [ [12, 3, 0, 0, 4, 0],
[ 0, 0, 0,11, 7, 0],
[ 0, 9,12, 0, 0, 0],
[ 0, 0, 0, 1, 1,12]
]);
Function: get/set for the matrix data
Returns : a reference to 2D array of integers(PFM) or floats (ICM, PWM)
Args : none for get;
a four line string, reference to 2D array, or a 2D piddle for set
pdl_matrix
Title : pdl_matrix
Usage : my $pdl = $pwm->pdl_matrix();
Function: access the PDL matrix used to store the actual
matrix data directly
Returns : a PDL object, aka a piddle
Args : none
revcom
Title : revcom
Usage : my $revcom_pfm = $pfm->revcom();
Function: create a matrix pattern object which is reverse complement
of the current one
Returns : a TFBS::Matrix::* object of the same type as the one
the method acted upon
Args : none
rawprint
Title : rawprint
Usage : my $rawstring = $pfm->rawprint);
Function: convert matrix data to a simple tab-separated format
Returns : a four-line string of tab-separated integers or floats
Args : none
prettyprint
Title : prettyprint
Usage : my $prettystring = $pfm->prettyprint();
Function: convert matrix data to a human-readable string format
Returns : a four-line string with nucleotides and aligned numbers
Args : none
length
Title : length
Usage : my $pattern_length = $pfm->length;
Function: gets the pattern length in nucleotides
(i.e. number of columns in the matrix)
Returns : an integer
Args : none
randomize_columns
Title : randomize_columns
Usage : $pfm->randomize_columns();
Function: Randomizes the columns of a matrix
Returns : Nothing
Args : none
perl v5.14.2 2008-01-24 TFBS::Matrix(3pm)