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Top Forums UNIX for Dummies Questions & Answers Merging tables: identifiying common and unique elements Post 302822491 by lsantome on Monday 17th of June 2013 05:09:20 PM
Old 06-17-2013
Hi MadeInGermany, thank you for your quick reply!

A1: Yes, every table is contained in a single file. I merge them two by two, based on their filename (pattern) with the following code:

Code:
for sample in `for file in *.tab; do echo ${file/_*/}; done | sort | uniq`; do
    cat $sample* \
    | cut -f1-33 \
    | sort -u -k2,2 \
    > $sample.tab
done

Explanation:
- The pattern defines which files are going to be merged
- Open files and select columns 1 to 33
- Sort rows based on column 2, removing duplicates
- Create an output file based on the pattern used in step one.

A2: No, identical lines do not have the same line number

Thank you again

Best,

lsantome
 

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COMM(1) 						    BSD General Commands Manual 						   COMM(1)

NAME
comm -- select or reject lines common to two files SYNOPSIS
comm [-123i] file1 file2 DESCRIPTION
The comm utility reads file1 and file2, which should be sorted lexically, and produces three text columns as output: lines only in file1; lines only in file2; and lines in both files. The filename ``-'' means the standard input. The following options are available: -1 Suppress printing of column 1. -2 Suppress printing of column 2. -3 Suppress printing of column 3. -i Case insensitive comparison of lines. Each column will have a number of tab characters prepended to it equal to the number of lower numbered columns that are being printed. For example, if column number two is being suppressed, lines printed in column number one will not have any tabs preceding them, and lines printed in column number three will have one. The comm utility assumes that the files are lexically sorted; all characters participate in line comparisons. DIAGNOSTICS
The comm utility exits 0 on success, and >0 if an error occurs. SEE ALSO
cmp(1), diff(1), sort(1), uniq(1) STANDARDS
The comm utility conforms to IEEE Std 1003.2-1992 (``POSIX.2''). HISTORY
A comm command appeared in Version 4 AT&T UNIX. BSD
June 6, 1993 BSD
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