That seems to cause the entire line which contains the pattern to be excluded I want all lines to be printed but the pattern to be removed, equivalent to
Hello!
I am writing a program to run through two large lists of data (~300,000 rows), find where rows in one file match another, and combine them based on matching fields. Due to the large file sizes, I'm guessing AWK will be the most efficient way to do this. Overall, the input and output I'm... (5 Replies)
Hi folks,
Lets say I have the following text file:
name, lastname, 1234, name.lastname@test.com
name1, lastname1, name2.lastname2@test.com, 2345
name, 3456, lastname, name3.lastname3@test.com
4567, name, lastname, name4.lastname4@test.com
I now need the following output:
1234... (5 Replies)
Hi experts,
I need to print the first field first then last two fields should come next and then i need to print rest of the fields.
Input :
a1,abc,jsd,fhf,fkk,b1,b2
a2,acb,dfg,ghj,b3,c4
a3,djf,wdjg,fkg,dff,ggk,d4,d5
Expected output:
a1,b1,b2,abc,jsd,fhf,fkk... (6 Replies)
Dear AWK-experts!
I did get stuck in the task of combining files after matching fields, so I'm still awkward with learning AWK.
There are 2 files: one containing 3 columns with ID, coding status, and score for long noncoding RNAs:
file1 (1.txt) (>5000 lines)
... (12 Replies)
Hi all,
I want to extract rows with the pattern ALPHANUMERIC/ALPHANUMNERIC in the 2nd column.
I dont wan rows with more than 1 slash or without any slash in 2nd column.
a a/b
b a/b/c
c a/b//c
d t/y
e r
f /f
I came up with the regex
grep '\/$' file
a a/b
b a/b/c
d t/y (3 Replies)
Hi
I have a file as below
<field1> <field2> <field3> ... <field_num1> <field_num2>
Trying to sort based on difference of <field_num1> and <field_num2> in desceding order and print all fields.
I tried this and it doesn't sort on the difference field .. Appreciate your help.
cat... (9 Replies)
In the below I am trying to use awk to match all the $13 values in input, which is tab-delimited,
that are in $1 of gene which is just a single column of text.
However only the line with the greatest $9 value in input needs to be printed.
So in the example below all the MECP2 and LTBP1... (0 Replies)
Hi everyone,
Given two files (test1 and test2) with the following contents:
test1:
80263760,I71
80267369,M44
80274628,L77
80276793,I32
80277390,K05
80277391,I06
80279206,I43
80279859,K37
80279866,K35
80279867,J16
80280346,I14and test2:
80263760,PT18
80279867,PT01I need to do some... (3 Replies)
Hi,
I have 2 tab-delimited input files as follows.
file1.tab:
green A apple
red B apple
file2.tab:
apple - A;Z
Objective:
Return $1 of file1 if,
. $1 of file2 matches $3 of file1 and,
. any single element (separated by ";") in $3 of file2 is present in $2 of file1
In order to... (3 Replies)
Trying to use awk to match the contents of each line in file1 with $5 in file2. Both files are tab-delimited and there may be a space or special character in the name being matched in file2, for example in file1 the name is BRCA1 but in file2 the name is BRCA 1 or in file1 name is BCR but in file2... (6 Replies)
Discussion started by: cmccabe
6 Replies
LEARN ABOUT DEBIAN
gmtlogo
GMTLOGO(1gmt) Generic Mapping Tools GMTLOGO(1gmt)NAME
gmtlogo - Adding a GMT graphics logo overlay to an illustration
SYNOPSIS
gmtlogo dx dy [ -Gfill ] [ -W[pen] ] >> plot.ps
DESCRIPTION
This scrips appends the GMT logo to an "open" PostScript file. The logo is 2 inches wide and 1 inch high and will be positioned with the
lower left corner at the position (dx,dy) relative to the current plot origin.
OPTIONS -G Select color or pattern for filling the underlying box [Default is no fill]. (See SPECIFYING FILL below).
-W Set pen attributes for the outline of the box [Default is no outline]. (See SPECIFYING PENS below).
SPECIFYING PENS
pen The attributes of lines and symbol outlines as defined by pen is a comma delimetered list of width, color and texture, each of which
is optional. width can be indicated as a measure (points, centimeters, inches) or as faint, thin[ner|nest], thick[er|est],
fat[ter|test], or obese. color specifies a gray shade or color (see SPECIFYING COLOR below). texture is a combination of dashes
`-' and dots `.'.
SPECIFYING FILL
fill The attribute fill specifies the solid shade or solid color (see SPECIFYING COLOR below) or the pattern used for filling polygons.
Patterns are specified as pdpi/pattern, where pattern gives the number of the built-in pattern (1-90) or the name of a Sun 1-, 8-,
or 24-bit raster file. The dpi sets the resolution of the image. For 1-bit rasters: use Pdpi/pattern for inverse video, or append
:Fcolor[B[color]] to specify fore- and background colors (use color = - for transparency). See GMT Cookbook & Technical Reference
Appendix E for information on individual patterns.
SPECIFYING COLOR
color The color of lines, areas and patterns can be specified by a valid color name; by a gray shade (in the range 0-255); by a decimal
color code (r/g/b, each in range 0-255; h-s-v, ranges 0-360, 0-1, 0-1; or c/m/y/k, each in range 0-1); or by a hexadecimal color
code (#rrggbb, as used in HTML). See the gmtcolors manpage for more information and a full list of color names.
SEE ALSO GMT(1), gmtcolors(5), psimage(1)GMT 4.5.7 15 Jul 2011 GMTLOGO(1gmt)