Hi Friends,
I want to delete specific columns from a file.
Say my file content is as follows:
"1","a","ww1",1234"
"2","b","wwr3","2222"
"3","c","erre","3333"
Now i want to delete the column 2 and 4 from this file.
That is I want the file content to be:
"1","ww1"
"2","wwr3"... (11 Replies)
Hi I am Newbie to Unix.Appreciate Help from forum
user would loada b.Csv File(Below example) in /data/m/ directory.Program need to read the b.csc to extract certain column and create a new file /data/d/ directory as csv file with new name.
User File Format
1232,samshouston,12345... (3 Replies)
Hi,
How can I grep a record for a value based on specific column.
If I simply do a grep 'AB' FilenName.txt, I might end up getting the records returned whose part of value is 'AB'.
But I want it specific to second column.
cut -d'|' -f 2 FileName.txt | grep 'AB'
But now it will return... (1 Reply)
HELLO! This is my first post here! By the way, I think it is great that people do this.
My question:
I have two files, one is a .dilm and one is a .txt. It is my understanding that the .dilm file can be treated as a .txt file. I wrote another program where I was able to manipulate it as if it... (3 Replies)
I need to automate a weekly process of piping a directory list to a csv file. Normally I do
ls -l > files_04182010.csv (04182010 being the date..)
Can someome show me how I would script this, so that when the script is ran it grabs the current date and formats it and allows me to use that... (8 Replies)
Hello. I was wondering if anyone could help. I have a file containing a large table in the format:
marker1 marker2 marker3 marker4
position1 position2 position3 position4
genotype1 genotype2 genotype3 genotype4
with marker being a name, position a numeric... (2 Replies)
Hi,
I have a file like this
a b c
d e f
g h i
j k l
Case1:
I want to transpose the whole file
Output1
a d g j
b e h k
c f i l
Case2
Transpose a specific column - Say 3rd (6 Replies)
Hi,
I'd like to swap the columns 1 and 2 of a space-delimited text file but only for the first 1000 rows. How do I go about doing that? Thanks! (1 Reply)
I am compiling a fortran program using gfortran and the result looks as below
I want to write a bash or awk script that will scan the information and output
only problems within a range of line numbers
Example: If I specify the file createmodl.f08, start line 1000 and end line 1100, I will... (8 Replies)
Can anyone please assist?
I have a .txt file(File1.txt) and a property file(propertyfile.txt) . I have to read the vales from the property file and .txt file and create the output file(outputfile.txt) mentioned in the attachment. For each record in .txt file,the below mentioned values shall be... (20 Replies)
Discussion started by: vinus
20 Replies
LEARN ABOUT DEBIAN
go-filter-subset
GO-FILTER-SUBSET(1p) User Contributed Perl Documentation GO-FILTER-SUBSET(1p)NAME
go-filter-subset.pl - extracts a subgraph from an ontology file
SYNOPSIS
go-filter-subset.pl -id GO:0003767 go.obo
go-filter-subset.pl -id GO:0003767 -to png go.obo | xv -
go-filter-subset.pl -filter_code 'sub{shift->name =~ /transcr/}' go.obo
DESCRIPTION
Exports a subset of an ontology from a file. The subset can be based on a specified set of IDs, a preset "subset" filter in the ontology
file (eg a GO "slim" or subset), or a user-defined filter.
The subset can be exported in any format, including a graphical image
ARGUMENTS -id ID
ID to use as leaf node in subgraph. All ancestors of this ID are included in the exported graph (unless -partial is set)
Multiple IDs can be passed
-id ID1 -id ID2 -id ID3 ....etc
-subset SUBSET_ID
Extracts a named subset from the ontology file. (only works with obo format files). For example, a specific GO slim
ONLY terms belonging to the subset are exported - the -partial option is automatically set
-namespace NAMESPACE
only terms in this namespace
-filter_code SUBROUTINE
advanced option
A subroutine with which the GO::Model::Term object is tested for inclusion in the subgraph (all ancestors are automatically included)
You should have an understanding of the go-perl object model before using this option
Example:
go-filter-subset -filter_code 'sub {shift->namespace eq 'molecular_function'}' go.obo
(the same things can be achieved with the -namespace option)
-partial
If this is set, then only terms that match the user query are included. Parentage is set to the next recursive parent node in the
filter
For example, with the -subset option: if X and Y belong to the subset, and Z does not, and X is_a Z is_a Y, then the exported graph
withh have X is_a Y
-use_cache
If this switch is specified, then caching mode is turned on.
With caching mode, the first time you parse a file, then an additional file will be exported in a special format that is fast to parse.
This file will have the same filename as the original file, except it will have the ".cache" suffix.
The next time you parse the file, this program will automatically check for the existence of the ".cache" file. If it exists, and is
more recent than the file you specified, this is parsed instead. If it does not exist, it is rebuilt.
DOCUMENTATION
<http://www.godatabase.org/dev>
perl v5.14.2 2010-05-12 GO-FILTER-SUBSET(1p)