06-13-2013
I am really sorry thats my mistake
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Hi all,
I have difficulty to solve the followign problem.
mydata:
StartPoint EndPoint
22 55
2222 2230
33 66
44 58
222 240
11 25
22 60
33 45
The union of above... (2 Replies)
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Dear Gurus,
I have 57 tab-delimited different text files, each one containing entries in 3 columns. The first column in each file contains names of objects. Some names are present in more than one file. I would like to find those names and store them in a separate text file, preferably with a... (6 Replies)
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Hi, I have a file1 of many long sequences, each preceded by a unique header line. file2 is 3-columns list: headers name, start position, end position. I'd like to extract the sequence region of file1 specified in file2.
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5. Shell Programming and Scripting
Hi I have 2 files; usually the end position in the file1 is the start position in the file2 and the end position in file2 will be the start position in file1 (flanks)
file1
Id start end
aaa1 0 3000070
aaa1 3095270 3095341
aaa1 3100822 3100894
aaa1 ... (1 Reply)
Discussion started by: anurupa777
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6. Shell Programming and Scripting
file1
chr pos1 pos2 pos3 pos4
1)chr1 1000 2000 3000 4000
2)chr1 1380 1480 6800 7800
3)chr1 6700 7700 1200 2200
4)chr2 8500 9500 5670 6670
file2
chr pos1 pos2 pos3 pos4
1)chr2 8500 9500 5000 6000
2)chr1 6700 7700 1200 2200
3)chr1 1380 1480 6700 7700
4)chr1 1000 2000 4900 5900
I... (2 Replies)
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7. Shell Programming and Scripting
Hello, here I am posting my query again with modified data input files.
see my query is :
i have two input files file1 and file2.
file1 is smalldata.fasta
>gi|546671471|gb|AWWX01449637.1| Bubalus bubalis breed Mediterranean WGS:AWWX01:contig449636, whole genome shotgun sequence... (20 Replies)
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Hi,
I have been trying to retrieve the names of files present in a directory one by one but the names of files are getting overlapped on one another.
I tried the below command.
ls -1 > filename
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9. Shell Programming and Scripting
Hi all,
I have a file like this I want to extract only those regions which are big and continous
chr1 3280000 3440000
chr1 3440000 3920000
chr1 3600000 3920000 # region coming within the 3440000 3920000. so i don't want it to be printed in output
chr1 3920000 4800000
chr1 ... (2 Replies)
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LEARN ABOUT SUSE
assert_perror
ASSERT_PERROR(3) Linux Programmer's Manual ASSERT_PERROR(3)
NAME
assert_perror - test errnum and abort
SYNOPSIS
#define _GNU_SOURCE
#include <assert.h>
void assert_perror(int errnum);
DESCRIPTION
If the macro NDEBUG was defined at the moment <assert.h> was last included, the macro assert_perror() generates no code, and hence does
nothing at all. Otherwise, the macro assert_perror() prints an error message to standard error and terminates the program by calling
abort(3) if errnum is nonzero. The message contains the filename, function name and line number of the macro call, and the output of str-
error(errnum).
RETURN VALUE
No value is returned.
CONFORMING TO
This is a GNU extension.
BUGS
The purpose of the assert macros is to help the programmer find bugs in his program, things that cannot happen unless there was a coding
mistake. However, with system or library calls the situation is rather different, and error returns can happen, and will happen, and
should be tested for. Not by an assert, where the test goes away when NDEBUG is defined, but by proper error handling code. Never use
this macro.
SEE ALSO
abort(3), assert(3), exit(3), strerror(3), feature_test_macros(7)
COLOPHON
This page is part of release 3.25 of the Linux man-pages project. A description of the project, and information about reporting bugs, can
be found at http://www.kernel.org/doc/man-pages/.
GNU
2002-08-25 ASSERT_PERROR(3)