I have 2 files; file 1 having smaller positions that overlap with the positions with positions in file2.
file1
file2
I want to get something like this
output
Hi all,
I have difficulty to solve the followign problem.
mydata:
StartPoint EndPoint
22 55
2222 2230
33 66
44 58
222 240
11 25
22 60
33 45
The union of above... (2 Replies)
Dear Gurus,
I have 57 tab-delimited different text files, each one containing entries in 3 columns. The first column in each file contains names of objects. Some names are present in more than one file. I would like to find those names and store them in a separate text file, preferably with a... (6 Replies)
Hi, I have a file1 of many long sequences, each preceded by a unique header line. file2 is 3-columns list: headers name, start position, end position. I'd like to extract the sequence region of file1 specified in file2.
Based on a post elsewhere, I found the code:
awk... (2 Replies)
Discussion started by: pathunkathunk
2 Replies
4. Forum Support Area for Unregistered Users & Account Problems
The forums have been seeing a sharp increase in spam bots, forum robots, and malicious registrations from certain countries. If you have been directed to this thread due to a "No Permission Error" when trying to register please post in this thread and request permission to register, including... (1 Reply)
Hi I have 2 files; usually the end position in the file1 is the start position in the file2 and the end position in file2 will be the start position in file1 (flanks)
file1
Id start end
aaa1 0 3000070
aaa1 3095270 3095341
aaa1 3100822 3100894
aaa1 ... (1 Reply)
Hello, here I am posting my query again with modified data input files.
see my query is :
i have two input files file1 and file2.
file1 is smalldata.fasta
>gi|546671471|gb|AWWX01449637.1| Bubalus bubalis breed Mediterranean WGS:AWWX01:contig449636, whole genome shotgun sequence... (20 Replies)
Hi,
I have been trying to retrieve the names of files present in a directory one by one but the names of files are getting overlapped on one another.
I tried the below command.
ls -1 > filename
please help me in getting the file names line by line without overlapping. I am using korn... (6 Replies)
Hi all,
I have a file like this I want to extract only those regions which are big and continous
chr1 3280000 3440000
chr1 3440000 3920000
chr1 3600000 3920000 # region coming within the 3440000 3920000. so i don't want it to be printed in output
chr1 3920000 4800000
chr1 ... (2 Replies)
Discussion started by: amrutha_sastry
2 Replies
LEARN ABOUT OSX
dnssec-dsfromkey
DNSSEC-DSFROMKEY(8) BIND9 DNSSEC-DSFROMKEY(8)NAME
dnssec-dsfromkey - DNSSEC DS RR generation tool
SYNOPSIS
dnssec-dsfromkey [-v level] [-1] [-2] [-a alg] {keyfile}
dnssec-dsfromkey {-s} [-v level] [-1] [-2] [-a alg] [-c class] [-d dir] {dnsname}
DESCRIPTION
dnssec-dsfromkey outputs the Delegation Signer (DS) resource record (RR), as defined in RFC 3658 and RFC 4509, for the given key(s).
OPTIONS -1
Use SHA-1 as the digest algorithm (the default is to use both SHA-1 and SHA-256).
-2
Use SHA-256 as the digest algorithm.
-a algorithm
Select the digest algorithm. The value of algorithm must be one of SHA-1 (SHA1) or SHA-256 (SHA256). These values are case insensitive.
-v level
Sets the debugging level.
-s
Keyset mode: in place of the keyfile name, the argument is the DNS domain name of a keyset file. Following options make sense only in
this mode.
-c class
Specifies the DNS class (default is IN), useful only in the keyset mode.
-d directory
Look for keyset files in directory as the directory, ignored when not in the keyset mode.
EXAMPLE
To build the SHA-256 DS RR from the Kexample.com.+003+26160 keyfile name, the following command would be issued:
dnssec-dsfromkey -2 Kexample.com.+003+26160
The command would print something like:
example.com. IN DS 26160 5 2 3A1EADA7A74B8D0BA86726B0C227AA85AB8BBD2B2004F41A868A54F0 C5EA0B94
FILES
The keyfile can be designed by the key identification Knnnn.+aaa+iiiii or the full file name Knnnn.+aaa+iiiii.key as generated by
dnssec-keygen(8).
The keyset file name is built from the directory, the string keyset- and the dnsname.
CAVEAT
A keyfile error can give a "file not found" even if the file exists.
SEE ALSO dnssec-keygen(8), dnssec-signzone(8), BIND 9 Administrator Reference Manual, RFC 3658, RFC 4509.
AUTHOR
Internet Systems Consortium
COPYRIGHT
Copyright (C) 2008 Internet Systems Consortium, Inc. ("ISC")
BIND9 November 29, 2008 DNSSEC-DSFROMKEY(8)