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Full Discussion: Concatenating 2 lines from 2 files having matching strings
Top Forums Shell Programming and Scripting Concatenating 2 lines from 2 files having matching strings Post 302818233 by Mohamed EL Hadi on Friday 7th of June 2013 07:13:16 AM
Old 06-07-2013
Concatenating 2 lines from 2 files having matching strings
Hello All Unix Users,

I am still new to Unix, however I am eager to learn it..
I have 2 files, some lines have some matching substrings, I would like to concatenate these lines into one lines, leaving other untouched. Here below is an example for that..

File 1 (fasta file):

Code:
>292183
AGAGTTTGATCCTGGCTCAGGATGAACGCTAGCGACAGGCTTAACACATGCAAGTCGAGGGGCAGCGGGGAGGAAGCTTGCTTTCTCTGCCGGCGACCGGCGCACGGGTGAGT
>551166
GTCGAGCGGCGAACGGGTGAGTAACGCGTGGATTATCTGCCCCGAGGTGGGGGATAACCCGGGGAAACTCGGGCTAATACCGCATATGACCGTGAGGTCAAAGGGGGGTCGCA

File 2:
Code:
292183	k__Bacteria
551166	k__Bacteria; p__Acidobacteria

The desired output:

Code:
>292183 k__Bacteria
AGAGTTTGATCCTGGCTCAGGATGAACGCTAGCGACAGGCTTAACACATGCAAGTCGAGGGGCAGCGGGGAGGAAGCTTGCTTTCTCTGCCGGCGACCGGCGCACGGGTGAGT
>551166 k__Bacteria; p__Acidobacteria
GTCGAGCGGCGAACGGGTGAGTAACGCGTGGATTATCTGCCCCGAGGTGGGGGATAACCCGGGGAAACTCGGGCTAATACCGCATATGACCGTGAGGTCAAAGGGGGGTCGCA

I tried to use awk and perl for that, but I never had them into one file..

I appreciate any help,
Best Regards,
Mohamed
 

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LEARN ABOUT DEBIAN

locale::script

Locale::Script(3perl)					 Perl Programmers Reference Guide				     Locale::Script(3perl)

NAME

       Locale::Script - standard codes for script identification

SYNOPSIS

	  use Locale::Script;

	  $script  = code2script('phnx');		      # 'Phoenician'
	  $code    = script2code('Phoenician'); 	      # 'Phnx'
	  $code    = script2code('Phoenician',
				 LOCALE_CODE_NUMERIC);	      # 115

	  @codes   = all_script_codes();
	  @scripts = all_script_names();

DESCRIPTION

       The "Locale::Script" module provides access to standards codes used for identifying scripts, such as those defined in ISO 15924.

       Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default ISO 15924
       four-letter codes will be used.

SUPPORTED CODE SETS

       There are several different code sets you can use for identifying scripts. The ones currently supported are:

       alpha
	   This is a set of four-letter (capitalized) codes from ISO 15924 such as 'Phnx' for Phoenician.

	   This code set is identified with the symbol "LOCALE_SCRIPT_ALPHA".

	   The Zxxx, Zyyy, and Zzzz codes are not used.

	   This is the default code set.

       numeric
	   This is a set of three-digit numeric codes from ISO 15924 such as 115 for Phoenician.

	   This code set is identified with the symbol "LOCALE_SCRIPT_NUMERIC".

ROUTINES

       code2script ( CODE [,CODESET] )
       script2code ( NAME [,CODESET] )
       script_code2code ( CODE ,CODESET ,CODESET2 )
       all_script_codes ( [CODESET] )
       all_script_names ( [CODESET] )
       Locale::Script::rename_script  ( CODE ,NEW_NAME [,CODESET] )
       Locale::Script::add_script  ( CODE ,NAME [,CODESET] )
       Locale::Script::delete_script  ( CODE [,CODESET] )
       Locale::Script::add_script_alias  ( NAME ,NEW_NAME )
       Locale::Script::delete_script_alias  ( NAME )
       Locale::Script::rename_script_code  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Script::add_script_code_alias  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Script::delete_script_code_alias  ( CODE [,CODESET] )
	   These routines are all documented in the Locale::Codes man page.

SEE ALSO

       Locale::Codes
       Locale::Constants
       http://www.unicode.org/iso15924/
	   Home page for ISO 15924.

AUTHOR

       See Locale::Codes for full author history.

       Currently maintained by Sullivan Beck (sbeck@cpan.org).

COPYRIGHT

	  Copyright (c) 1997-2001 Canon Research Centre Europe (CRE).
	  Copyright (c) 2001-2010 Neil Bowers
	  Copyright (c) 2010-2011 Sullivan Beck

       This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

perl v5.14.2							    2011-09-26						     Locale::Script(3perl)
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