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Full Discussion: Getting the non-homogenous letter row from a text file
Top Forums Shell Programming and Scripting Getting the non-homogenous letter row from a text file Post 302817471 by Lucky Ali on Thursday 6th of June 2013 12:38:47 AM
Old 06-06-2013
Getting the non-homogenous letter row from a text file
I do have a large tab delimited file with the following format

Code:
CCCCCGCCCCCCCCCCcCCCCCCCCCCCCCCCC 23 65 3 4
AAAAAAAAAAAAAAAAaAAAAAAAAAAAAAAAA 24 6 89 90
TGTTTTTTTTTTTTGGtTTTTTTTTTTTTTTTT 2 4 8 90
TTTT-TTTTTTTTTTTtTTTTTTTTTTTTTTTT 1 34 89 50
GGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGG 87 6 78 66
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8 78 45 61
AAAAATAAAAAAGGGAAAAAAAAAAAAAAAAAA 78 8 9 23

Each row/line will have 33 letters and each line will only have multiple occurrences of etters out of a pool of ATGC (also small atgc). some may have also '-'. I would like to extract those lines (rows) that have a non-homogenious letters or if one or more letter is different compared to the rest, grap that entire column.

This is the desired out put.

Code:
CCCCCGCCCCCCCCCCcCCCCCCCCCCCCCCCC 23 65 3 4
TGTTTTTTTTTTTTGGtTTTTTTTTTTTTTTTT 2 4 8 90
GGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGG 87 6 78 66
AAAAATAAAAAAGGGAAAAAAAAAAAAAAAAAA 78 8 9 23

Please let me know the best way to do this in awk.
 

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LEARN ABOUT CENTOS

locale::codes::currency

Locale::Codes::Currency(3)				User Contributed Perl Documentation				Locale::Codes::Currency(3)

NAME

       Locale::Codes::Currency - standard codes for currency identification

SYNOPSIS

	   use Locale::Codes::Currency;

	   $curr = code2currency('usd');     # $curr gets 'US Dollar'
	   $code = currency2code('Euro');    # $code gets 'eur'

	   @codes   = all_currency_codes();
	   @names   = all_currency_names();

DESCRIPTION

       The "Locale::Codes::Currency" module provides access to standard codes used for identifying currencies and funds, such as those defined in
       ISO 4217.

       Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default ISO 4217
       three-letter codes will be used.

SUPPORTED CODE SETS

       There are several different code sets you can use for identifying currencies. A code set may be specified using either a name, or a
       constant that is automatically exported by this module.

       For example, the two are equivalent:

	  $curr = code2currency('usd','alpha');
	  $curr = code2currency('usd',LOCALE_CURR_ALPHA);

       The codesets currently supported are:

       alpha, LOCALE_CURR_ALPHA
	   This is a set of three-letter (uppercase) codes from ISO 4217 such as EUR for Euro.

	   Two of the codes specified by the standard (XTS which is reserved for testing purposes and XXX which is for transactions where no
	   currency is involved) are omitted.

	   This is the default code set.

       num, LOCALE_CURR_NUMERIC
	   This is the set of three-digit numeric codes from ISO 4217.

ROUTINES

       code2currency ( CODE [,CODESET] )
       currency2code ( NAME [,CODESET] )
       currency_code2code ( CODE ,CODESET ,CODESET2 )
       all_currency_codes ( [CODESET] )
       all_currency_names ( [CODESET] )
       Locale::Codes::Currency::rename_currency  ( CODE ,NEW_NAME [,CODESET] )
       Locale::Codes::Currency::add_currency  ( CODE ,NAME [,CODESET] )
       Locale::Codes::Currency::delete_currency  ( CODE [,CODESET] )
       Locale::Codes::Currency::add_currency_alias  ( NAME ,NEW_NAME )
       Locale::Codes::Currency::delete_currency_alias  ( NAME )
       Locale::Codes::Currency::rename_currency_code  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Codes::Currency::add_currency_code_alias  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Codes::Currency::delete_currency_code_alias  ( CODE [,CODESET] )
	   These routines are all documented in the Locale::Codes::API man page.

SEE ALSO

       Locale::Codes
	   The Locale-Codes distribution.

       Locale::Codes::API
	   The list of functions supported by this module.

       http://www.iso.org/iso/support/currency_codes_list-1.htm
	   The ISO 4217 data.

AUTHOR

       See Locale::Codes for full author history.

       Currently maintained by Sullivan Beck (sbeck@cpan.org).

COPYRIGHT

	  Copyright (c) 1997-2001 Canon Research Centre Europe (CRE).
	  Copyright (c) 2001	  Michael Hennecke
	  Copyright (c) 2001-2010 Neil Bowers
	  Copyright (c) 2010-2013 Sullivan Beck

       This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

perl v5.16.3							    2013-02-27						Locale::Codes::Currency(3)
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