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Full Discussion: Field Number read and "wc -l"
Top Forums Shell Programming and Scripting Field Number read and "wc -l" Post 302813431 by kekanap on Monday 27th of May 2013 10:18:51 AM
Old 05-27-2013
Fundix i am getting an error
Code:
awk -F"," ' $14 ~ /6010|2345|5690|8670|4567/ { print $0 ; ++cpt } END { print cpt} ' < *.csv

-bash: *.csv: ambiguous redirect

---------- Post updated at 04:18 PM ---------- Previous update was at 04:04 PM ----------

i tried

cat *_201304*.csv|awk -F"," ' $14 ~ /9100/9101/9102/9103/9104/9105/9106/9150/9151/9152/9153/9200/9201/9202/9203/9300/9301/9302/9303/9304/9305/9400/9401/9510/9511/ { print $0 ; ++cpt } END { print cpt} '

it bring back

Code:
 cat  *_201304*.csv|awk -F"," ' $14 ~ /9100/9101/9102/9103/9104/9105/9106/9150/9151/9152/9153/9200/9201/9202/9203/9300/9301/9302/9303/9304/9305/9400/9401/9510/9511/ { print $0 ; ++cpt } END { print cpt} '
awk:  $14 ~ /9100/9101/9102/9103/9104/9105/9106/9150/9151/9152/9153/9200/9201/9202/9203/9300/9301/9302/9303/9304/9305/9400/9401/9510/9511/ { print $0 ; ++cpt } END { print cpt}
awk:                                                                                                                                       ^ syntax error

Last edited by Scrutinizer; 05-29-2013 at 04:13 PM.. Reason: code tags
 

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LEARN ABOUT DEBIAN

gmxdump

gmxdump(1)					 GROMACS suite, VERSION 4.5.4-dev-20110404-bc5695c					gmxdump(1)

NAME

       gmxdump - makes binary files human readable

       VERSION 4.5.4-dev-20110404-bc5695c

SYNOPSIS

       gmxdump	-s  topol.tpr  -f  traj.xtc  -e  ener.edr -cp state.cpt -p topol.top -mtx hessian.mtx -om grompp.mdp -[no]h -[no]version -nice int
       -[no]nr -[no]sys

DESCRIPTION

	gmxdump reads a run input file ( .tpa/ .tpr/ .tpb), a trajectory ( .trj/ .trr/ .xtc), an energy file ( .ene/ .edr), or a checkpoint file (
       .cpt) and prints that to standard output in a readable format.  This program is essential for checking your run input file in case of prob-
       lems.

       The program can also preprocess a topology to help finding problems.  Note that currently setting  GMXLIB is  the  only	way  to  customize
       directories used for searching include files.

FILES

       -s topol.tpr Input, Opt.
	Run input file: tpr tpb tpa

       -f traj.xtc Input, Opt.
	Trajectory: xtc trr trj gro g96 pdb cpt

       -e ener.edr Input, Opt.
	Energy file

       -cp state.cpt Input, Opt.
	Checkpoint file

       -p topol.top Input, Opt.
	Topology file

       -mtx hessian.mtx Input, Opt.
	Hessian matrix

       -om grompp.mdp Output, Opt.
	grompp input file with MD parameters

OTHER OPTIONS

       -[no]hno
	Print help info and quit

       -[no]versionno
	Print version info and quit

       -nice int 0
	Set the nicelevel

       -[no]nryes
	Show index numbers in output (leaving them out makes comparison easier, but creates a useless topology)

       -[no]sysno
	List the atoms and bonded interactions for the whole system instead of for each molecule type

SEE ALSO

       gromacs(7)

       More information about GROMACS is available at <http://www.gromacs.org/>.

								  Mon 4 Apr 2011							gmxdump(1)
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