awk ' {n = split ($8,TMP,";") # split the 8th field into TMP array using separator ";", keep no. of elements in n
$8 = "" # clear 8th field
for (i=1; i<=n; i++) # inspect all elements of TMP
if (match (TMP[i], /^DP=|^MQ=|^SNPEFF/)) # if any array element starts with either of the regexs
{sub (/^.*=/,"",TMP[i]) # remove the part before "="
$8 = $8 ($8?"\t":"") TMP[i]} # append the rest to field 8
}
1 # print the modified line
' FS="\t" file # use TAB as the separator
I have gone through all the threads in the forum and tested out different things. I am trying to split a 3GB file into multiple files. Some files are even larger than this.
For example:
split -l 3000000 filename.txt
This is very slow and it splits the file with 3 million records in each... (10 Replies)
Hi,
I have a fixed width text file without any header row. One of the columns contains a date in YYYYMMDD format.
If the original file contains 3 dates, I want my shell script to split the file into 3 small files with data for each date.
I am a newbie and need help doing this. (14 Replies)
using awk to substitute data in a column delimited text file
hello i would like to use awk to do the following calculation from the following snippet.
input file
C;2390 ;CV BOUILLOTTE 2L 2FACES NERVUREES ;1.00 ;3552612239004;13417 ;25 ;50 ; 12;50000 ; ; ... (3 Replies)
Hi,
I need help to split a long text in a column which is separated by ; and i need to print them out in multiple columns. My input file is tab-delimited and has 11 columns as below:-
aRg02004 21452 asdfwf 21452 21452 4.6e-29 5e-29 -1 3 50 ffg|GGD|9009 14101.10 High class -node. ; ffg|GGD|969... (3 Replies)
Hi,
I have a similar input format-
A_1 2
B_0 4
A_1 1
B_2 5
A_4 1
and looking to print in this output format with headers. can you suggest in awk?awk because i am doing some pattern matching from parent file to print column 1 of my input using awk already.Thanks!
letter number_of_letters... (5 Replies)
The following is my code
nawk -F',' '
BEGIN { printf "MSISDN,IMSI,NAM,TS11,TS21,TS22,OBO,OBI,BAIC,BAOC,BOIC,BOIEXH,APNID0,APNID1,APNID2,APNID3,APNID0,CSP,RSA\n" }
{
for(i=1; i<=NF; i++)
{
split($i,a,":")
gsub(" ","", a)
printf "%s;",a
}
printf "\n"
}'HLR_DUMP_BZV >> HLR_full
This is... (1 Reply)
Hi,
I've data like these:
Gene1,Gene2 snp1
Gene3 snp2
Gene4 snp3
I'd like to split line if comma and then print remaining information for the respective gene.
My code:
awk '{
if($1 ~ /,/){
n = split($0, t, ",") (7 Replies)
I want to split this with every 5 or 50 depend on how much data the file will have. And remove the comma on the end
Source file will have
001,0002,0003,004,005,0006,0007,007A,007B,007C,007E,007F,008A,008C
Need Output from every 5 tab and remove the comma from end of each row
... (4 Replies)
Hi,
I am trying to split the following output into two columns, where each column has Source: Destination:
OUTPUT TO FILTER
$ tshark -r Capture_without_mtr.pcap -V | awk '/ (Source|Destination): /' | more
Source: x.x.x.x
Destination: x.x.x.x
Source:... (2 Replies)
Discussion started by: sand1234
2 Replies
LEARN ABOUT SUNOS
fmt
fmt(1) User Commands fmt(1)NAME
fmt - simple text formatters
SYNOPSIS
fmt [-cs] [-w width | -width] [inputfile...]
DESCRIPTION
fmt is a simple text formatter that fills and joins lines to produce output lines of (up to) the number of characters specified in the -w
width option. The default width is 72. fmt concatenates the inputfiles listed as arguments. If none are given, fmt formats text from the
standard input.
Blank lines are preserved in the output, as is the spacing between words. fmt does not fill nor split lines beginning with a `.' (dot), for
compatibility with
nroff(1). Nor does it fill or split a set of contiguous non-blank lines which is determined to be a mail header, the first line of which
must begin with "From".
Indentation is preserved in the output, and input lines with differing indentation are not joined (unless -c is used).
fmt can also be used as an in-line text filter for vi(1). The vi command:
!}fmt
reformats the text between the cursor location and the end of the paragraph.
OPTIONS -c Crown margin mode. Preserve the indentation of the first two lines within a paragraph, and align the left margin of
each subsequent line with that of the second line. This is useful for tagged paragraphs.
-s Split lines only. Do not join short lines to form longer ones. This prevents sample lines of code, and other such
formatted text, from being unduly combined.
-w width | -width Fill output lines to up to width columns.
OPERANDS
inputfile Input file.
ENVIRONMENT VARIABLES
See environ(5) for a description of the LC_CTYPE environment variable that affects the execution of fmt.
ATTRIBUTES
See attributes(5) for descriptions of the following attributes:
+-----------------------------+-----------------------------+
| ATTRIBUTE TYPE | ATTRIBUTE VALUE |
+-----------------------------+-----------------------------+
|Availability |SUNWcsu |
+-----------------------------+-----------------------------+
SEE ALSO nroff(1), vi(1), attributes(5), environ(5)NOTES
The -width option is acceptable for BSD compatibility, but it may go away in future releases.
SunOS 5.10 9 May 1997 fmt(1)