Hi
I have few files. For some files the cursor is at the end of last line. For other files, cursor is at the new line at the end.
I want to bring the cursor down to next line for the files that are having cursor at the end of last line
In otherwords, I want to introduce a blank line at the... (5 Replies)
This is what I want to do. I want to write a script that reads each line (of the highlighted file below) and add a specific number of blank lines (sometime 2, 3 or 5 lines) at the end of each line while copying that line. For example, here is the input.
The sky is blue.
I like to eat.
I like... (19 Replies)
Hi all,
using VI, can anyone tell me how to add some characters onto the end of a line where the line begins with certain charactars eg
a,b,c,.......,
r,s,t,........,
a,b,c,.......,
all lines in the above example starting with a,b,c, I want to add an x at the end of the line so the... (6 Replies)
Hi all,
I have this sample file (actual file is larger) and i need to add comma at the end of every line.
1234
4335
232345
1212
3535
Output
1234,
4335,
232345,
1212,
3535,
TIA - jak (2 Replies)
Hello Everyone,
I need a help from experts of this community regarding one of the issue that I am facing with shell scripting.
My requirement is to append char's at the end of each line of a file. The char that will be appended is variable and will be passed through command line.
The... (20 Replies)
Hi,
I have a script which I need to change. I want to add a semicolon at the end of each line where the line starts with "grant"
for e.g.
create table(....
);
grant select on TABL1 to USER1
grant select on TABL1 to USER2should become
create table(....
);
grant select on TABL1 to... (3 Replies)
hi,
i need a help in the script , need to append a string at the end of each line of a files , and append the files into a single file vertically.
eg
file1 has the following columns
abc,def,aaa
aaa,aa,aaa
files 2 has the following rows and columns
abc,def,aaa
aaa,aa,aaa
i... (3 Replies)
I have a shell script that looks something like the following:
mysql -uroot db1 < db1.sql
mysql -uroot db2 < db2.sql
mysql -uroot db3 < db3.sql
mysql -uroot db4 < db4.sql
....
different db names in more than 160 lines.
I want to run this script with nohup and have a status later.
So,... (6 Replies)
I have two files, file1 and file2 who have identical number of rows and columns. However, the script is supposed to be used for for different files and I cannot know the format in advance. Also, the number of columns changes within the file, some rows have more and some less columns (they are... (13 Replies)
Hi,
i have 2 files , the data i need to match is in masterfile and i need to pull out column 3 from master if column 1 and 2 match and output entire row to new file
I have tried with join and awk and i keep getting blank outputs or same file
is there an easier way than what i am... (4 Replies)
Discussion started by: axis88
4 Replies
LEARN ABOUT DEBIAN
vcf-compare
VCF-COMPARE(1) User Commands VCF-COMPARE(1)NAME
vcf-compare - compare bgzipped and tabix indexed VCF files
SYNOPSIS
compare-vcf [OPTIONS] file1.vcf file2.vcf ...
DESCRIPTION
About: Compare bgzipped and tabix indexed VCF files. (E.g. bgzip file.vcf; tabix -p vcf file.vcf.gz)
OPTIONS -c, --chromosomes <list|file>
Same as -r, left for backward compatibility. Please do not use as it will be dropped in the future.
-d, --debug
Debugging information. Giving the option multiple times increases verbosity
-H, --cmp-haplotypes
Compare haplotypes, not only positions
-m, --name-mapping <list|file>
Use with -H when comparing files with differing column names. The argument to this options is a comma-separated list or one mapping
per line in a file. The names are colon separated and must appear in the same order as the files on the command line.
-R, --refseq <file>
Compare the actual sequence, not just positions. Use with -w to compare indels.
-r, --regions <list|file>
Process the given regions (comma-separated list or one region per line in a file).
-s, --samples <list>
Process only the listed samples. Excluding unwanted samples may increase performance considerably.
-w, --win <int>
In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be it a
SNP or an indel).
-h, -?, --help
This help message.
vcf-compare 0.1.5 July 2011 VCF-COMPARE(1)