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Full Discussion: Waiting a job to finish
Top Forums Shell Programming and Scripting Waiting a job to finish Post 302790425 by lengolass on Friday 5th of April 2013 10:57:50 AM
Old 04-05-2013
Waiting a job to finish

Hello again,

I am runnning a job on a cluster and I submit a job with the command

Code:
qsub script.sh

where script.sh is a script with the command i want o use. When i enter this command the cluster gives a huber like 123456 as the JOB ID.

I want the job to run about 12 hours and when it stops a new job will be submitted to the cluster. So what i do is creating a new script which includes the following:

Code:
for dir in $(seq 1 1 2)
do

msub script.sh

wait 123456 

done

but it fails waiting the job to finish and instead gives two jobs to the cluster.

Is it possible to do this?

Last edited by jim mcnamara; 04-06-2013 at 08:06 PM..
 

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proto(4)						     Kernel Interfaces Manual							  proto(4)

NAME
proto - prototype job file for at SYNOPSIS
DESCRIPTION
When a job is submitted to or the job is constructed as a POSIX shell script (see at(1)). The job file is created in as follows: o creates a header describing the job as an job or a job. jobs submitted to all queues other than queue are listed as jobs. The header is: for an job, or for a job. o A set of POSIX shell commands is added to make the environment (see environ(5)) for the job the same as the current environment. o then copies text from the prototype file to the job file, except for special variables that are replaced by other text: Replaced by the current working directory. Replaced by the current file size limit (see ulimit(2)). Replaced by the current umask (see umask(2)). Replaced by the time at which the job should be run, expressed as seconds since January 1, 1970, 00:00 Coordinated Universal Time, preceded by a colon. Replaced by text read by from the standard input (that is, the commands provided to to be run in the job). o When a job is submitted to queue queue, uses the file as the prototype file if it exists. Otherwise, it uses the file EXAMPLES
The following file creates commands to change the current directory, file size limit, and umask in the job to their respective values as they existed when was originally run. These commands are inserted before the commands in the job: SEE ALSO
at(1), queuedefs(4). STANDARDS CONFORMANCE
proto(4)
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