04-04-2013
Scrutinizer
I will be very thankful if you can be more specific. I am really trying to understand the whole think but I just cannot get it to work.
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Hi,
I'm trying to assign a score to each row which will allow me to identify which rows differ. In the example file below, I've used "," to indicate column separators (my actual file has tab separators). In this example, I'd like to identify that row 1 and row 5 are the same, and row 2 and row... (4 Replies)
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My files look like this
And I need to cut the sequences at the last "A" found in the following 'pattern' -highlighted for easier identification, the pattern is the actual file is not highlighted.
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My file looks something like this
Wnat I need is to look for the Reference sequence (">Reference1") and based on the length of that sequence trim all the entries in that file. So, the rersulting file will contain all sequences with the same length, like this
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Hi,
I have a file with more than 28000 records and it looks like below..
>mm10_refflat_ABCD range=chr1:1234567-2345678
tgtgcacactacacatgactagtacatgactagac....so on
>mm10_refflat_BCD range=chr1:3234567-4545678...
tgtgcacactacacatgactagtatgtgcacactacacatgactagta
.
.
.
.
.
so on
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I have two files containing hundreds of different sequences with the same Identifiers (ID-001, ID-002, etc.,), something like this:
Infile1:
ID-001 ATGGGAGCGGGGGCGTCTGCCTTGAGGGGAGAGAAGCTAGATACA
ID-002 ATGGGAGCGGGGGCGTCTGTTTTGAGGGGAGAGAAGCTAGATACA
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I have to remove sequences from a file based on the distance value. I am attaching the file containing the distances (Distance.xls)
The second file looks something like this:
Sequences.txt
>Sample1 Freq 59
ggatatgatgatgaactggt
>Sample1 Freq 54
ggatatgatgttgaactggt
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Hi experts,
I have a score matrix like below, where the 3rd column ( 1 max, 0 min) says how close the 2nd column variable is to the 1st column variable
a b 0.3
a c 0.87
a d 0.75
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I have this file:
>ID1
AA
>ID2
TTTTTT
>ID-3
AAAAAAAAA
>ID4
TTTTTTGGAGATCAGTAGCAGATGACAG-GGGGG-TGCACCCC
Add I am trying to use this script to output sequences longer than 15 characters:
sed -r '/^>/N;{/^.{,15}$/d}'
The desire output would be this:
>ID4... (8 Replies)
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LEARN ABOUT DEBIAN
ssl_ctx_new
SSL_CTX_new(3SSL) OpenSSL SSL_CTX_new(3SSL)
NAME
SSL_CTX_new - create a new SSL_CTX object as framework for TLS/SSL enabled functions
SYNOPSIS
#include <openssl/ssl.h>
SSL_CTX *SSL_CTX_new(const SSL_METHOD *method);
DESCRIPTION
SSL_CTX_new() creates a new SSL_CTX object as framework to establish TLS/SSL enabled connections.
NOTES
The SSL_CTX object uses method as connection method. The methods exist in a generic type (for client and server use), a server only type,
and a client only type. method can be of the following types:
SSLv2_method(void), SSLv2_server_method(void), SSLv2_client_method(void)
A TLS/SSL connection established with these methods will only understand the SSLv2 protocol. A client will send out SSLv2 client hello
messages and will also indicate that it only understand SSLv2. A server will only understand SSLv2 client hello messages.
SSLv3_method(void), SSLv3_server_method(void), SSLv3_client_method(void)
A TLS/SSL connection established with these methods will only understand the SSLv3 protocol. A client will send out SSLv3 client hello
messages and will indicate that it only understands SSLv3. A server will only understand SSLv3 client hello messages. This especially
means, that it will not understand SSLv2 client hello messages which are widely used for compatibility reasons, see SSLv23_*_method().
TLSv1_method(void), TLSv1_server_method(void), TLSv1_client_method(void)
A TLS/SSL connection established with these methods will only understand the TLSv1 protocol. A client will send out TLSv1 client hello
messages and will indicate that it only understands TLSv1. A server will only understand TLSv1 client hello messages. This especially
means, that it will not understand SSLv2 client hello messages which are widely used for compatibility reasons, see SSLv23_*_method().
It will also not understand SSLv3 client hello messages.
SSLv23_method(void), SSLv23_server_method(void), SSLv23_client_method(void)
A TLS/SSL connection established with these methods will understand the SSLv2, SSLv3, and TLSv1 protocol. A client will send out SSLv2
client hello messages and will indicate that it also understands SSLv3 and TLSv1. A server will understand SSLv2, SSLv3, and TLSv1
client hello messages. This is the best choice when compatibility is a concern.
The list of protocols available can later be limited using the SSL_OP_NO_SSLv2, SSL_OP_NO_SSLv3, SSL_OP_NO_TLSv1 options of the
SSL_CTX_set_options() or SSL_set_options() functions. Using these options it is possible to choose e.g. SSLv23_server_method() and be able
to negotiate with all possible clients, but to only allow newer protocols like SSLv3 or TLSv1.
SSL_CTX_new() initializes the list of ciphers, the session cache setting, the callbacks, the keys and certificates, and the options to its
default values.
RETURN VALUES
The following return values can occur:
NULL
The creation of a new SSL_CTX object failed. Check the error stack to find out the reason.
Pointer to an SSL_CTX object
The return value points to an allocated SSL_CTX object.
SEE ALSO
SSL_CTX_free(3), SSL_accept(3), ssl(3), SSL_set_connect_state(3)
1.0.1e 2013-02-11 SSL_CTX_new(3SSL)