Hi All,
I am new to shell scripting but have successfully created some of my own scripts using awk and sed. However, I have come across a problem that I cannot solve on my own and have not been able to find a good example that relates to what I am trying to do.
What I need is for the... (4 Replies)
I have lines in a file like this (140,000+ entries):
value1,
value2,
value3,
"
"
I want to concatenate the three (there are 22) lines with commas so it looks like this
value1, value2, value3
"
"
I'm trying with
:g/,$/s/,$/, /g
but that is not flying.
any ideas? (6 Replies)
Hello,
I am using the following script to read some log and then contruct my email for notification.
When I run this on my test server, i am getting the output as below,
But when I move to another server, the EOL seems to not affect,
should I use some setting so the output is... (1 Reply)
Hi,
I have a text as below
test1 test2 test3\
test4 test5 test6 test7
newtest1 newtest2\
newtest3 newtest4 newtest5
And need this to be replaces to
test1 test2 test3 test4 test5 test6 test7
newtest1 newtest2 newtest3 newtest4 newtest5
So my requirement is to remove the EOL... (5 Replies)
working on interactive ftp script
saving log and want to remove the password from log
so "quote PASS foofoo" would become "quote PASS XXXXXXX"
replacing or removing the password is of no matter
have tried several sed commands but have only been successful with character matching not pattern
... (2 Replies)
I was editing a file with vi and crashed so when I opened the file again I had the .swp file to deal with. I made the wrong choice trying to recover my file and wound up with a file with no eol (end of line) characters.
I have forgotten the code to substitute and don't want to make an even... (2 Replies)
Hard to imagine that in the two decades of its existence this product once ruled supreme, but the news is finally there:
RIP Internet Explorer: Twitter mourns and mocks death of Microsoft (0 Replies)
Discussion started by: figaro
0 Replies
LEARN ABOUT DEBIAN
bio::search::hit::fasta
Bio::Search::Hit::Fasta(3pm) User Contributed Perl Documentation Bio::Search::Hit::Fasta(3pm)NAME
Bio::Search::Hit::Fasta - Hit object specific for Fasta-generated hits
SYNOPSIS
# You wouldn't normally create these manually;
# instead they would be produced by Bio::SearchIO::fasta
use Bio::Search::Hit::Fasta;
my $hit = Bio::Search::Hit::Fasta->new(id=>'LBL_6321', desc=>'lipoprotein', e_val=>0.01);
DESCRIPTION
Bio::Search::Hit::HitI objects are data structures that contain information about specific hits obtained during a library search. Some
information will be algorithm-specific, but others will be generally defined, such as the ability to obtain alignment objects corresponding
to each hit.
SEE ALSO
Bio::Search::Hit::HitI, Bio::Search::Hit::GenericHit, Bio::SearchIO::fasta.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably
to one of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Aaron Mackey
Email amackey-at-virginia.edu
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
_initialize
Function: where the heavy stuff will happen when new is called
AUTOLOAD
Function: Provide getter/setters for ID,DESC,SIZE,INITN,INIT1,OPT,ZSC,E_VAL
perl v5.14.2 2012-03-02 Bio::Search::Hit::Fasta(3pm)