The values inside the square brace indicate that either of them can be present at that position. And those ones without a brace, means that they are the only ones that could be printed at that location.
Now, I would like to know if there is a possibility for a script to print all possible combinations of these alphabet occurrences.
For an example sake, if I consider only the first alphabet within a square brace, the output would be
The alphabets in bold indicate the first ones in the square brace. Like this way, is there a possibility to print all possible combinations?
Hi,
I have file name (abcd001). I want to extract on the alphabets from this file name. I don't want the numeric part of it. Once i extract the alphabets the i can search for all those file. Could anyone help on this. Thanks in advance (2 Replies)
echo -n "read this also:"
read NewAuthor
if ]' ) ] ; then
echo "its a digit"
else
echo "something else"
fi
Hey guys , i am trying to do a search to check if the input is using alphabets and nothing else. I tried using ] and ] but none seems to work
When i use digit, it read 22.k... (5 Replies)
I have a text file with a huge dataset, and each row in that dataset has some data(65479 rows). In that file I need to find the number of times a-z & A-Z Appears.
How Can I Initialise Array into an Array to parse the count also I need to parse a,A into a single array preferably.
example of... (3 Replies)
Dear all, could you please help me with awk please?
I have such input:
Input:
a d
b e
c f
The number of lines is unknown before reading the file.
I need to print possible combination between the two columns like this:
Output:
a d
b d
c d
a e
b e
c e
a f (2 Replies)
Hello all,
I have several directories with a sequence of files like this
IM-0001-0001.dcm
IM-0001-0002.dcm
IM-0001-0003.dcm
IM-0001-0004.dcm
IM-0001-0005.dcm
I would like to print out the name of the file that is missing.
I currently have the following ineffecient way to do this... (4 Replies)
Dear Perl users,
I need your help to solve my problem below.
I want to print the sequence number without missing number within the range.
E.g. my sequence number :
1 2 3 4 5 6 7 8 11 12 13 14
my desired output:
1 -8 , 11-14
my code below but still problem with the result:
1 - 14
1 -... (2 Replies)
Hi all,
I have a file like this
ID 3BP5L_HUMAN Reviewed; 393 AA.
AC Q7L8J4; Q96FI5; Q9BQH8; Q9C0E3;
DT 05-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 05-SEP-2012, entry version 71.
FT COILED 59 140 ... (1 Reply)
Use and complete the template provided. The entire template must be completed. If you don't, your post may be deleted!
1. The problem statement, all variables and given/known data:
I am trying to convert a C language program over to Sparc Assembley and I am getting Undefined first referenced... (4 Replies)
Hi i have a file like this as shown below:
DA PROCESS_ID IDENTIFIER DA_FILE STATUS WAITING_FOR SCOPED_DEPENDENT
1836 21000 01052019 BH90P.TEMP.DA1836.FTP W NULL ... (6 Replies)
In a python script I have 2 files printing side by side on the same line. I want to have 1 of the files to be already displayed at once while the other file print down the list in the file and it still will produce new lines. I want to do it like that to reduce printing a lot of lines and... (0 Replies)
Discussion started by: bigvito19
0 Replies
LEARN ABOUT DEBIAN
bio::symbol::alphabeti
Bio::Symbol::AlphabetI(3pm) User Contributed Perl Documentation Bio::Symbol::AlphabetI(3pm)NAME
Bio::Symbol::AlphabetI - A Symbol Alphabet
SYNOPSIS
# get a Bio::Symbol::AlphabetI object somehow
my @symbols = $alphabet->symbols;
my @subalphas = $alphabet->alphabets;
if( $alphabet->contains($symbol) ) {
# do something
}
DESCRIPTION
Alphabet contains set of symbols, which can be concatenated to form symbol lists. Sequence string, for example, is stringified
representation of the symbol list (tokens of symbols).
This module was implemented for the purposes of meeting the BSANE/BioCORBA spec 0.3 only.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Jason Stajich
Email jason@bioperl.org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
AlphabetI Interface methods
symbols
Title : symbols
Usage : my @symbols = $alphabet->symbols();
Function: Get/Set Symbol list for an alphabet
List of symbols, which make up this alphabet.
Returns : Array of L<Bio::Symbol::SymbolI> objects
Args : (optional) Array of L<Bio::Symbol::SymbolI> objects
alphabets
Title : alphabets
Usage : my @alphabets = $alphabet->alphabets();
Function: Get/Set Sub Alphabet list for an alphabet
Sub-alphabets. E.g. codons made from DNAxDNAxDNA alphabets
Returns : Array of L<Bio::Symbol::AlphabetI> objects
Args : (optional) Array of L<Bio::Symbol::AlphabetI> objects
contains
Title : contains
Usage : if($alphabet->contains($symbol)) { }
Function: Tests of Symbol is contained in this alphabet
Returns : Boolean
Args : L<Bio::Symbol::SymbolI>
perl v5.14.2 2012-03-02 Bio::Symbol::AlphabetI(3pm)