Sponsored Content
Top Forums Shell Programming and Scripting Print combinations of alphabets in a sequence Post 302788673 by jacobs.smith on Tuesday 2nd of April 2013 10:10:34 AM
Old 04-02-2013
Print combinations of alphabets in a sequence

Hi Friends,

I have a series of alphabets like this

Code:
[CA]A[GCAT][ATG][AA]GCAA[TG]

The values inside the square brace indicate that either of them can be present at that position. And those ones without a brace, means that they are the only ones that could be printed at that location.

Now, I would like to know if there is a possibility for a script to print all possible combinations of these alphabet occurrences.

For an example sake, if I consider only the first alphabet within a square brace, the output would be

Code:
CAGAAGCAAT

The alphabets in bold indicate the first ones in the square brace. Like this way, is there a possibility to print all possible combinations?

Thanks
 

10 More Discussions You Might Find Interesting

1. UNIX for Advanced & Expert Users

Extracting only Alphabets from a value

Hi, I have file name (abcd001). I want to extract on the alphabets from this file name. I don't want the numeric part of it. Once i extract the alphabets the i can search for all those file. Could anyone help on this. Thanks in advance (2 Replies)
Discussion started by: amitkhiare
2 Replies

2. Shell Programming and Scripting

Checking for Alphabets

echo -n "read this also:" read NewAuthor if ]' ) ] ; then echo "its a digit" else echo "something else" fi Hey guys , i am trying to do a search to check if the input is using alphabets and nothing else. I tried using ] and ] but none seems to work When i use digit, it read 22.k... (5 Replies)
Discussion started by: gregarion
5 Replies

3. Shell Programming and Scripting

count alphabets in a flat file and print

I have a text file with a huge dataset, and each row in that dataset has some data(65479 rows). In that file I need to find the number of times a-z & A-Z Appears. How Can I Initialise Array into an Array to parse the count also I need to parse a,A into a single array preferably. example of... (3 Replies)
Discussion started by: vmsenthil
3 Replies

4. Shell Programming and Scripting

awk -- print combinations for 2 cols

Dear all, could you please help me with awk please? I have such input: Input: a d b e c f The number of lines is unknown before reading the file. I need to print possible combination between the two columns like this: Output: a d b d c d a e b e c e a f (2 Replies)
Discussion started by: irrevocabile
2 Replies

5. Shell Programming and Scripting

print out missing files in a sequence

Hello all, I have several directories with a sequence of files like this IM-0001-0001.dcm IM-0001-0002.dcm IM-0001-0003.dcm IM-0001-0004.dcm IM-0001-0005.dcm I would like to print out the name of the file that is missing. I currently have the following ineffecient way to do this... (4 Replies)
Discussion started by: avatar_007
4 Replies

6. Shell Programming and Scripting

Perl : print the sequence number without missing number

Dear Perl users, I need your help to solve my problem below. I want to print the sequence number without missing number within the range. E.g. my sequence number : 1 2 3 4 5 6 7 8 11 12 13 14 my desired output: 1 -8 , 11-14 my code below but still problem with the result: 1 - 14 1 -... (2 Replies)
Discussion started by: mandai
2 Replies

7. Shell Programming and Scripting

find common entries and match the number with long sequence and cut that sequence in output

Hi all, I have a file like this ID 3BP5L_HUMAN Reviewed; 393 AA. AC Q7L8J4; Q96FI5; Q9BQH8; Q9C0E3; DT 05-FEB-2008, integrated into UniProtKB/Swiss-Prot. DT 05-JUL-2004, sequence version 1. DT 05-SEP-2012, entry version 71. FT COILED 59 140 ... (1 Reply)
Discussion started by: manigrover
1 Replies

8. Homework & Coursework Questions

program to find and print a Fibonacci sequence of numbers. --Errors

Use and complete the template provided. The entire template must be completed. If you don't, your post may be deleted! 1. The problem statement, all variables and given/known data: I am trying to convert a C language program over to Sparc Assembley and I am getting Undefined first referenced... (4 Replies)
Discussion started by: kenjiro310
4 Replies

9. UNIX for Beginners Questions & Answers

Print Line as per the dependent sequence in shell script.

Hi i have a file like this as shown below: DA PROCESS_ID IDENTIFIER DA_FILE STATUS WAITING_FOR SCOPED_DEPENDENT 1836 21000 01052019 BH90P.TEMP.DA1836.FTP W NULL ... (6 Replies)
Discussion started by: krishnaswarnkar
6 Replies

10. UNIX for Beginners Questions & Answers

Print a python script down a list in a text file without printing a lot combinations

In a python script I have 2 files printing side by side on the same line. I want to have 1 of the files to be already displayed at once while the other file print down the list in the file and it still will produce new lines. I want to do it like that to reduce printing a lot of lines and... (0 Replies)
Discussion started by: bigvito19
0 Replies
PPI::Statement::UnmatchedBrace(3)			User Contributed Perl Documentation			 PPI::Statement::UnmatchedBrace(3)

NAME
PPI::Statement::UnmatchedBrace - Isolated unmatched brace SYNOPSIS
sub foo { 1; } } # <--- This is an unmatched brace INHERITANCE
PPI::Statement::UnmatchedBrace isa PPI::Statement isa PPI::Node isa PPI::Element DESCRIPTION
The "PPI::Statement::UnmatchedBrace" class is a miscellaneous utility class. Objects of this type should be rare, or not exist at all in normal valid PPI::Document objects. It can be either a round ')', square ']' or curly '}' brace, this class does not distinguish. Objects of this type are only allocated at a structural level, not a lexical level (as they are lexically invalid anyway). The presence of a "PPI::Statement::UnmatchedBrace" indicated a broken or invalid document. Or maybe a bug in PPI, but far more likely a broken Document. :) METHODS
"PPI::Statement::UnmatchedBrace" has no additional methods beyond the default ones provided by PPI::Statement, PPI::Node and PPI::Element. SUPPORT
See the support section in the main module. AUTHOR
Adam Kennedy <adamk@cpan.org> COPYRIGHT
Copyright 2001 - 2011 Adam Kennedy. This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself. The full text of the license can be found in the LICENSE file included with this module. perl v5.18.2 2011-02-25 PPI::Statement::UnmatchedBrace(3)
All times are GMT -4. The time now is 05:23 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy