Sponsored Content
Top Forums Shell Programming and Scripting Randomly selecting sequences and generating specific output files Post 302786883 by Scrutinizer on Thursday 28th of March 2013 10:12:15 AM
Old 03-28-2013
Quote:
Originally Posted by Xterra
RedHat. I am not in front of my computer now. I will update this info later today.
Thanks!
With gawk you need to include the parentheses when calling rand() and srand(). I edited it in my post...
This User Gave Thanks to Scrutinizer For This Post:
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Generating files of specific size

I've been working on getting a script to take size, dir name and file name variables from an input file and creating the same dir structure along with the file of specific size. An example of the input file: size/dirname/filename 2100/JAN_06/12345ABC.TCC 2354/FEB_06/24564XYZ.NOS... (2 Replies)
Discussion started by: nxd25
2 Replies

2. UNIX for Dummies Questions & Answers

randomly renaming files

I have a directory of files that look like filename 001.ext, filename 002.ext, etc. I'd like to rename the files with unique random numbered names, so that the original filenames are stripped and the files are given a new, random number name. I'm not super new to UNIX, but I don't often use it for... (2 Replies)
Discussion started by: platz
2 Replies

3. Shell Programming and Scripting

PERL - Selecting specific files based on 'date stamp' values

Hi, I've list of files in a directory, which have date stamp value in their names. ex: abc_data_20071102.csv, abc_data_20091221.csv, abc_data_20100110.csv, abc_data_20100222.csv, abc_data_20080620.csv,... etc., I need to select and process only files, within the given date... (4 Replies)
Discussion started by: ganapati
4 Replies

4. Shell Programming and Scripting

Trimming sequences based on specific pattern

My files look like this And I need to cut the sequences at the last "A" found in the following 'pattern' -highlighted for easier identification, the pattern is the actual file is not highlighted. The expected result should look like this Thus, all the sequences would end with AGCCCTA... (2 Replies)
Discussion started by: Xterra
2 Replies

5. Shell Programming and Scripting

Removing specific sequences from file

My file looks like this But I need to remove the entry with the identifier >Reference1 along with the entire sequence. Thus, I will end up having the following file Thanks in advance! (2 Replies)
Discussion started by: Xterra
2 Replies

6. UNIX for Dummies Questions & Answers

Selecting specific line using awk

Hi, I would like to get the specific line from the file taking specific coloumn as reference. Thanks and Regards (1 Reply)
Discussion started by: kkarthik_kaja
1 Replies

7. Shell Programming and Scripting

Selecting sequences based on scores

I have two files with thousands of sequences of different lengths. infile1 contains the actual sequences and infile2 the scores for each A, T, G and C in infile1. Something like this: infile1: >HZVJKYI01ECH5R TTGATGTGCCAGCTGCCGTTGGTGTGCCAA >HZVJKYI01AQWJ8 GGATATGATGATGAACTGGTTTGGCACACC... (4 Replies)
Discussion started by: Xterra
4 Replies

8. Shell Programming and Scripting

Help with selecting files from "diff" output

I have two directories Dir_A and Dir_A_Arc. Need help with a shell script. The shell script needs to take the path to these two directories as parameters $1 and $2. The script needs to check if any files exist in these directories and if either of the directories are empty then exit... (5 Replies)
Discussion started by: gaurav99
5 Replies

9. UNIX for Beginners Questions & Answers

Split Command Generating Incomplete Output Files

Hello All, May i please know how do i ensure my split command would NOT generate incomplete output files like below, the last lines in each file is missing some columns or last line is complete. split -b 50GB File File_ File_aa |551|70210203|xxxxxxx|12/22/2010 20:44:58|11/01/2010... (1 Reply)
Discussion started by: Ariean
1 Replies

10. UNIX for Beginners Questions & Answers

How to add specific bases at the beginning and ending of all the fasta sequences?

Hi, I have to add 7 bases of specific nucleotide at the beginning and ending of all the fasta sequences of a file. For example, I have a multi fasta file namely test.fasta as given below test.fasta >TalAA18_Xoo_CIAT_NZ_CP033194.1:_2936369-2939570:+1... (1 Reply)
Discussion started by: dineshkumarsrk
1 Replies
RAND(3) 						   BSD Library Functions Manual 						   RAND(3)

NAME
rand, srand, sranddev, rand_r -- bad random number generator LIBRARY
Standard C Library (libc, -lc) SYNOPSIS
#include <stdlib.h> void srand(unsigned seed); void sranddev(void); int rand(void); int rand_r(unsigned *ctx); DESCRIPTION
The functions described in this manual page are not cryptographically secure. Cryptographic applications should use arc4random(3) instead. These interfaces are obsoleted by random(3). The rand() function computes a sequence of pseudo-random integers in the range of 0 to RAND_MAX (as defined by the header file <stdlib.h>). The srand() function sets its argument seed as the seed for a new sequence of pseudo-random numbers to be returned by rand(). These sequences are repeatable by calling srand() with the same seed value. If no seed value is provided, the functions are automatically seeded with a value of 1. The sranddev() function initializes a seed using pseudo-random numbers obtained from the kernel. The rand_r() function provides the same functionality as rand(). A pointer to the context value ctx must be supplied by the caller. For better generator quality, use random(3) or lrand48(3). SEE ALSO
arc4random(3), lrand48(3), random(3), random(4) STANDARDS
The rand() and srand() functions conform to ISO/IEC 9899:1990 (``ISO C90''). The rand_r() function is as proposed in the POSIX.4a Draft #6 document. BSD
April 2, 2013 BSD
All times are GMT -4. The time now is 04:28 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy