See if the following bash script works. It works fine here. If $RANDOM function causes error because not bash, there are other ways to generate random numbers under Unix.
I've been working on getting a script to take size, dir name and file name variables from an input file and creating the same dir structure along with the file of specific size.
An example of the input file:
size/dirname/filename
2100/JAN_06/12345ABC.TCC
2354/FEB_06/24564XYZ.NOS... (2 Replies)
I have a directory of files that look like filename 001.ext, filename 002.ext, etc. I'd like to rename the files with unique random numbered names, so that the original filenames are stripped and the files are given a new, random number name. I'm not super new to UNIX, but I don't often use it for... (2 Replies)
Hi,
I've list of files in a directory, which have date stamp value in their names.
ex:
abc_data_20071102.csv,
abc_data_20091221.csv,
abc_data_20100110.csv,
abc_data_20100222.csv,
abc_data_20080620.csv,... etc.,
I need to select and process only files, within the given date... (4 Replies)
My files look like this
And I need to cut the sequences at the last "A" found in the following 'pattern' -highlighted for easier identification, the pattern is the actual file is not highlighted.
The expected result should look like this
Thus, all the sequences would end with AGCCCTA... (2 Replies)
My file looks like this
But I need to remove the entry with the identifier >Reference1 along with the entire sequence. Thus, I will end up having the following file
Thanks in advance! (2 Replies)
I have two files with thousands of sequences of different lengths. infile1 contains the actual sequences and infile2 the scores for each A, T, G and C in infile1. Something like this:
infile1:
>HZVJKYI01ECH5R
TTGATGTGCCAGCTGCCGTTGGTGTGCCAA
>HZVJKYI01AQWJ8
GGATATGATGATGAACTGGTTTGGCACACC... (4 Replies)
I have two directories Dir_A and Dir_A_Arc. Need help with a shell script.
The shell script needs to take the path to these two directories as parameters $1 and $2.
The script needs to check if any files exist in these directories and if either of the directories are empty then exit... (5 Replies)
Hello All,
May i please know how do i ensure my split command would NOT generate incomplete output files like below, the last lines in each file is missing some columns or last line is complete.
split -b 50GB File File_
File_aa
|551|70210203|xxxxxxx|12/22/2010 20:44:58|11/01/2010... (1 Reply)
Hi,
I have to add 7 bases of specific nucleotide at the beginning and ending of all the fasta sequences of a file. For example, I have a multi fasta file namely test.fasta as given below
test.fasta
>TalAA18_Xoo_CIAT_NZ_CP033194.1:_2936369-2939570:+1... (1 Reply)
Discussion started by: dineshkumarsrk
1 Replies
LEARN ABOUT DEBIAN
pescetti
PESCETTI(1) General Commands Manual PESCETTI(1)NAME
pescetti -- Pseudo-Duplimate Generator
SYNOPSIS
pescetti
DESCRIPTION
This manual page documents briefly the pescetti command.
OPTIONS
Here are a list of the available options and what they do. You must specify exactly one from --demo, --generate or --load.
--help Prints the help text
--demo Demonstration mode. Generates one hand with permutations and the tutorial for how to use them.
--generate=N
Generate N random boards
--load=boards.txt
Load boards+analysis from boards.txt
--load-dds=boards.dds
Load boards from boards.dds in dds format
--load-analysis=tricks.txt
Load analysis from tricks.txt
--permutations=permutations.txt
Generate the permutations and save them to the given file
--curtains=curtains.txt
Save curtain cards to file curtains.txt
--save=boards.txt
Save the boards+analysis to boards.txt
--save-dds=boards.dds
Save the boards to boards.dds in dds format
--save-analysis=tricks.txt
Save the analysis to tricks.txt
--format=html|txt|pdf
Set the output mode to the given format
--title=title
Set the title for the output
--output=hands.txt
Print the hands to hands.txt, rather than to standard output
--stats Generate statistics about the set of boards; included in the hands output
--analyze Run the dds analyzer on the boards and print the resulting numberof tricks (warning SLOW)
--criteria=
A list of criteria to apply to each generated hand to generate specific hand types. The list should be space separated and each
item may be suffixed with a colon and a (fractional) probability value which can be used to weight the criteria.
E.g. --criteria="weaknt:0.8 strongnt:0.5"
Valid criteria are: unbalanced weaknt strongnt twont strongtwo weaktwo three twoclubs 4441 singlesuit twosuits partscore game
slam game-invite slam-invite jumpshift jumpfit splinter bacon weird
--probability=factor
Generate hands matching the criteria with only the given probability. Factor is in the range 0 to 1. On each attempt to generate
a board it is rejected if it doesn't match the criteria with the given probability. A factor of about 0.8 gives roughly half
matching boards
AUTHOR
This manual page was written by Matthew Johnson <debian@matthew.ath.cx>. Permission is granted to copy, distribute and/or modify this docu-
ment under the terms of the GNU General Public License, Version 2 as published by the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
PESCETTI(1)