03-26-2013
In you output samples, the lines in each set of output files are all in the order in which they appeared in the input files. Is that a requirement for your output, or is it just a coincidence in the random numbers used for your example?
With truly random numbers, the output could contain more than one copy of some output lines. Is it a requirement that the output lines be unique?
Last edited by Don Cragun; 03-26-2013 at 08:35 PM..
Reason: added another question
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LEARN ABOUT DEBIAN
bp_mutate
BP_MUTATE(1p) User Contributed Perl Documentation BP_MUTATE(1p)
NAME
mutate.pl - randomly mutagenize a single protein or DNA sequence
SYNOPSIS
./mutate.pl -p 25 -i test.fa -n 5 -f swiss -o muts.swiss
#or
./mutate.pl --percent=25 --input=test.fa --number=5 -output=x.fa
DESCRIPTION
Randomly mutagenize a single protein or DNA sequence one or more times. Specify percentage mutated and number of resulting mutant
sequences. Print mutagenized sequences to STDOUT or write to an output file.
-h|--help Help
-p|--percent Percent mutagenized
-n|--number Number of mutant sequences created
-o|--output Output file (optional)
-f|--format Output format (default: fasta)
-i|--input Input file
FEEDBACK
User feedback is an integral part of the evolution of this and other Bioperl scripts. Send your comments and suggestions to the Bioperl
mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR
Brian Osborne, bosborne at alum.mit.edu
perl v5.14.2 2012-03-02 BP_MUTATE(1p)