Hi All,
I want to find a specific pattern from approximately 400000 files on solaris platform. Its very heavy for me to grep that pattern to each file individually.
Can anybody suggest me some way to search for specific pattern (alpha numeric) from these forty thousand files. Please note that... (6 Replies)
hi friens, :)
if i need to find files with extension .c++,.C++,.cpp,.Cpp,.CPp,.cPP,.CpP,.cpP,.c,.C
wat is the pattern for finding them
:confused: (2 Replies)
There is a procedure I do here at work where I have to synchronize file systems. The source file system always has three or four directories of hundreds of thousands of tiny (1k or smaller) or empty files. Whenever my rsync command reaches these directories, I'm waiting for hours for those files... (3 Replies)
I have the following situation:
a text file with 50000 string patterns:
abc2344536
gvk6575556
klo6575556
....
and 3 text files each with more than 1 million lines:
...
000000 abc2344536 46575 0000
000000 abc2344536 46575 4444
000000 abc2344555 46575 1234
...
I... (8 Replies)
I need to find a smarter way to process about 60,000 files in a single directory.
Every night a script runs on each file generating a output on another directory; this used to take 5 hours, but as the data grows it is taking 7 hours.
The files are of different sizes, but there are 16 cores... (10 Replies)
>testfile
while read x
do
if then
echo $x >> testfile
else
fi
if then
echo $x >> testfile
else
fi
done < list_of_files
is there any efficient way to search abc.dml and xyz.dml ? (2 Replies)
hello
i have two files
temp.txt
and temp_unique.text
the second file consists the unique fields from the temp.txt file
the strings stored are in the following form
4,4
17,12
15,65
4,4
14,41
15,65
65,89
1254,1298i'm able to run the following script to get the total count of a... (3 Replies)
Hello Linux Masters,
I am not a linux expert therefore i need help from linux gurus.
Well i have a requirement where i need to search all files based on first patterns and after seraching all files then serach second pattern in all files which i have extracted based on first pattern.... (1 Reply)
Hi to all,
I have thousand of files in a folder with names with format "FILE-YYYY-MM-DD-HHMM" for what I want to send the following AWK command
awk '/Code.*/' FILE-2014*
I'd like to separate all files that have the same date to a folder named with the corresponding date. For example, if I... (7 Replies)
Hello.
For a given folder, I want to select any files find $PATH1 -f \( -name "*" but omit any files like pattern name ! -iname "*.jpg" ! -iname "*.xsession*" ..... \) and also omit any subfolder like pattern name -type d \( -name "/etc/gconf/gconf.*" -o -name "*cache*" -o -name "*Cache*" -o... (2 Replies)
Discussion started by: jcdole
2 Replies
LEARN ABOUT DEBIAN
bio::tools::eutilities::history
Bio::Tools::EUtilities::History(3pm) User Contributed Perl Documentation Bio::Tools::EUtilities::History(3pm)NAME
Bio::Tools::EUtilities::History - lightweight implementation of HistoryI interface (not bound to filehandles, extraneous methods, etc).
SYNOPSIS
#should work for any class which is-a HistoryI
if ($obj->has_History) {
# do something here
}
($webenv, $querykey) = $obj->history;
$obj->history($webenv, $querykey);
$webenv = $obj->get_webenv;
$query_key = $obj->get_query_key;
DESCRIPTION
This class extends methods for any EUtilDataI implementation allow instances to dealwith NCBI history data (WebEnv and query_key). These
can be used as parameters for further queries against data sets stored on the NCBI server, much like NCBI's Entrez search history. These
are important when one wants to run complex queries using esearch, retrieve related data using elink, and retrieve large datasets using
epost/efetch.
This class is the simplest implementation and merely holds data for future queries from any HistoryI. See also
Bio::Tools::EUtilities::Query (esearch) and Bio::Tools::EUtilities::LinkSet (elink), which also implement HistoryI.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@lists.open-bio.org - General discussion
http://www.bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web.
https://redmine.open-bio.org/projects/bioperl/
AUTHOR
Email cjfields at bioperl dot org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
history
Title : history
Usage : my ($webenv, $qk) = $hist->history
Function : Get/Set two-element list of webenv() and query_key()
Returns : array
Args : two-element list of webenv, query key
get_webenv
Title : get_webenv
Usage : my $webenv = $hist->get_webenv
Function : returns web environment key needed to retrieve results from
NCBI server
Returns : string (encoded key)
Args : none
get_query_key
Title : get_query_key
Usage : my $qk = $hist->get_query_key
Function : returns query key (integer) for the history number for this session
Returns : integer
Args : none
to_string
Title : to_string
Usage : $foo->to_string()
Function : converts current object to string
Returns : none
Args : (optional) simple data for text formatting
Note : Used generally for debugging and for the print_* methods
perl v5.14.2 2012-03-02 Bio::Tools::EUtilities::History(3pm)