I would like to remove characters from column 7 so that from an input file looking like this:
>HWI-EAS422_12:4:1:69:89 GGTTTAAATATTGCACAAAAGGTATAGAGCGT U0 1 0 0 ref_chr8.fa 6527777 F DD
I get something like that in an output file:
... (13 Replies)
I have a large text-file with tab-delimited genetic data that looks like:
KSC112 KSC234 0 0 1 1 A G C T
I simply wan to delete the first column, but since the file has 600 000 columns, it is not possible with awk (seems to be limited at 32k columns).
Does anyone have an idea how to do this? (2 Replies)
I want to add a new column to a tab delimited text file. It will be the first column and it will just be 1's. How do I go about doing that? Thanks! (1 Reply)
Hi all,
I'm new to Unix and work primarily in bioinformatics. I am in need of a script which will allow me to replace "1" with "chr1" in only the first column of a file which looks like such:
1 10327 rs112750067 T C . PASS ASP;RSPOS=10327;... (4 Replies)
I have a file which looks like this:
73450 articles and news developmental psychology 2006-03-30 16:22:40 1 http://www.usnews.com
73450 articles and news developmental psychology 2006-03-30 16:22:40 2 http://www.apa.org
73450 articles and news developmental psychology 2006-03-30... (1 Reply)
I have a file having the following entries:
test1 test2 test3
11 22 33
22 44 66
99 99 44
---
I want to add a column so that the above file becomes:
test1 test2 test3 notest
11 22 33 *
22 44 66 *
99 99 44 *
---
Thanks (6 Replies)
I am fairly new to programming and trying to resolve this problem. I have the file like this.
CHROM POS REF ALT 10_sample.bam 11_sample.bam 12_sample.bam 13_sample.bam 14_sample.bam 15_sample.bam 16_sample.bam
tg93 77 T C T T T T T
tg93 79 ... (4 Replies)
Hi all ,
I have a file having 12 columns tab delimited .
I need to read this file and remove the column 3 and column 4 and insert a word in column 3 as "AVIALABLE "
Is there a way to do this . I am trying like below
Thanks
DJ
cat $FILENAME|awk -F"\t" '{ print $1 "\t... (3 Replies)
Hello Everyone..
I want to replace the retail col from FileI with cstp1 col from FileP if the strpno matches in both files
FileP.txt
... (2 Replies)
Discussion started by: YogeshG
2 Replies
LEARN ABOUT DEBIAN
oggcut
OGGCUT(1) User Manuals OGGCUT(1)NAME
oggCut - extracts parts of an ogg file (.ogv, .ogg and .oga)
SYNOPSIS
oggCut [options] inputfile outputfile
DESCRIPTION
oggCut creates a new ogg file named outputfile as a subpart of the original file named inputfile
oggCut is able to cut video (theora) only files, audio (vorbis) only files or files with both video and audio streams.
The start and end time for the cut area must be given in milliseconds with the options -s and -e.
As a video stream consists of I-frames (which are full pictures) and P-frames (which are delta pictures to the leading I-frame) the oggCut
algorithm searches for the first I-frame. If a video file would start with a p-frame, the player is not able to interpret this picture, as
the leading I-frame (on where it is based) is not available. oggCut starts the I-frame search at the start time given by the -s option. So
expect a shorter video time than the calculated seconds for the new file.
oggCut does not do any reencoding, therefore the output quality is completely the same as from the input file.
For those involved into the ogg container format: The file is cut on packet basis, not on page basis.
There is another tool called oggCut out in the internet with a different synopis. This one has not been written by the author of this tool
you are actually using.
OPTIONS -s Cut start position in ms. If the input file is a video file, the cut area starts with the next keyframe found. Default: 0
Example: -s 5000
-l Length of the cut area in ms. If -e is also given, the length is ignored.
Example: -l 10000
-e Cut end position in ms. If -l is also used, the end position is prefered. If the end position is set to -1, the end of the stream is
assumed.
Default: -1
Example: -e 20000
EXAMPLE
oggCut -s 1000 -e 21000 myVideo.ogv myOutput.ogv
Creates a new video called myOutput.ogv from the video myVideo.ogv starting after 1 second ending after 21 seconds
AUTHOR
Joern Seger <yorn at gmx dot net>
SEE ALSO oggCat(1), oggJoin(1), oggSplit(1), oggTranscode(1), oggSlideshow(1), oggThumb(1), oggSilence(1)Linux JAN 2010 OGGCUT(1)